Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   QMM27_RS08850 Genome accession   NZ_AP025939
Coordinates   1749203..1750102 (-) Length   299 a.a.
NCBI ID   WP_000904867.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain Utah_35B-24     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1744203..1755102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMM27_RS08830 (Utah35B_17350) rsmA 1744957..1745829 (-) 873 WP_001216869.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  QMM27_RS08835 (Utah35B_17360) - 1745960..1746268 (-) 309 WP_000333257.1 hypothetical protein -
  QMM27_RS08840 (Utah35B_17370) - 1746261..1746902 (-) 642 WP_000565531.1 ABC transporter ATP-binding protein -
  QMM27_RS08845 (Utah35B_17380) - 1746904..1748934 (-) 2031 WP_000825281.1 bacteriocin-associated integral membrane family protein -
  QMM27_RS08850 (Utah35B_17390) comR 1749203..1750102 (-) 900 WP_000904867.1 helix-turn-helix domain-containing protein Regulator
  QMM27_RS08855 (Utah35B_17400) rnmV 1750174..1750734 (-) 561 WP_000664448.1 ribonuclease M5 -
  QMM27_RS08860 (Utah35B_17410) - 1750734..1751507 (-) 774 WP_000575607.1 TatD family hydrolase -
  QMM27_RS08865 (Utah35B_17420) - 1751813..1752502 (-) 690 WP_230738454.1 DUF1542 domain-containing protein -
  QMM27_RS08870 (Utah35B_17430) rpmH 1752741..1752875 (-) 135 WP_000831905.1 50S ribosomal protein L34 -
  QMM27_RS08875 (Utah35B_17440) - 1753043..1753996 (-) 954 WP_001155321.1 IS30-like element ISSpn8 family transposase -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 35191.04 Da        Isoelectric Point: 5.0703

>NTDB_id=79205 QMM27_RS08850 WP_000904867.1 1749203..1750102(-) (comR) [Streptococcus pneumoniae strain Utah_35B-24]
MLIGQKIKEIRIEKGISRPDFCGDEQGLTVRQLSRIESGASQPSLPKLAYIARRLGVPVYSLMPDFSALPSAYLELKYQI
LREPIYGKEEEYDKKEACLEEIYKTYFDNLPKEEQLACEVLQACLDTSRTRRPEYAELILEEHMPQIIEKEAYSINDMLL
IRLFFYQMLIRKDLAKFINQIEKLMLFLLEQKKVTQIENYFIIRDTLISGMCCLEKVGVTDCFNDYLSCLQEIMDKTQDY
QKKPLVFMFLWKQALRVERDFSLAESFYQSSKTFAKLIGDGFLVKKLTEEWQEDVKKYL

Nucleotide


Download         Length: 900 bp        

>NTDB_id=79205 QMM27_RS08850 WP_000904867.1 1749203..1750102(-) (comR) [Streptococcus pneumoniae strain Utah_35B-24]
ATGTTAATTGGTCAAAAAATTAAAGAGATTCGGATAGAAAAAGGAATTAGTCGTCCAGATTTTTGTGGAGATGAGCAAGG
ACTGACAGTTCGTCAACTGTCGCGAATTGAAAGTGGAGCTTCGCAACCGAGTTTGCCCAAGTTAGCCTATATTGCTCGCC
GGCTAGGAGTTCCAGTTTATAGCCTTATGCCGGATTTTTCAGCTCTTCCTTCTGCTTATTTAGAATTGAAATACCAGATT
TTACGTGAACCAATCTATGGTAAAGAAGAGGAGTACGATAAGAAGGAAGCGTGTTTGGAAGAGATTTATAAAACATACTT
TGATAATCTTCCTAAAGAAGAACAATTAGCATGTGAAGTATTGCAGGCGTGTTTGGATACTTCTAGAACTAGAAGGCCTG
AATATGCAGAGTTAATACTTGAGGAACATATGCCTCAGATTATAGAAAAAGAAGCTTATTCAATAAATGATATGTTGTTG
ATTCGTTTGTTTTTTTATCAAATGCTCATTAGAAAAGATCTTGCCAAATTTATAAATCAAATCGAAAAGCTAATGCTCTT
TCTTTTGGAACAGAAGAAGGTAACTCAAATAGAGAATTACTTTATAATTAGAGATACTCTTATTTCAGGAATGTGTTGTC
TTGAAAAGGTAGGAGTAACTGATTGTTTTAATGATTATCTATCGTGTTTACAAGAAATTATGGATAAAACTCAAGATTAT
CAAAAGAAACCTCTTGTATTTATGTTTTTGTGGAAGCAAGCATTAAGAGTAGAAAGAGATTTTAGTTTAGCTGAATCATT
TTATCAGTCTTCTAAAACATTTGCGAAGCTAATTGGAGATGGATTTCTAGTAAAGAAATTGACAGAGGAATGGCAAGAGG
ATGTCAAAAAATATTTATAA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(7-59)

ComR tetratricopeptide (ComR_TPR)

(70-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus mutans UA159

37.755

98.328

0.371
  comR Streptococcus suis P1/7

37.801

97.324

0.368
  comR Streptococcus suis 05ZYH33

37.801

97.324

0.368

Multiple sequence alignment