Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   Q7621_RS02295 Genome accession   NZ_CP131712
Coordinates   452513..453562 (+) Length   349 a.a.
NCBI ID   WP_000653774.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 2008C09-280     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 447513..458562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7621_RS02265 (Q7621_02270) - 448358..448714 (+) 357 WP_000114427.1 hypothetical protein -
  Q7621_RS02270 (Q7621_02275) dnaJ 449116..450252 (+) 1137 WP_001066295.1 molecular chaperone DnaJ -
  Q7621_RS02275 (Q7621_02280) - 450564..450848 (-) 285 WP_025169639.1 hypothetical protein -
  Q7621_RS02280 (Q7621_02285) - 451010..451297 (-) 288 WP_000777753.1 hypothetical protein -
  Q7621_RS02285 (Q7621_02290) - 451307..451717 (-) 411 WP_001278301.1 HIT family protein -
  Q7621_RS02290 (Q7621_02295) pptA 451785..452516 (+) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  Q7621_RS02295 (Q7621_02300) pptB 452513..453562 (+) 1050 WP_000653774.1 ABC transporter permease Regulator
  Q7621_RS02300 (Q7621_02305) - 453730..454059 (-) 330 WP_000132572.1 hypothetical protein -
  Q7621_RS02305 (Q7621_02310) - 454335..454673 (+) 339 WP_000876675.1 LytTR family DNA-binding domain-containing protein -
  Q7621_RS02310 (Q7621_02315) comE/blpR 454678..455415 (+) 738 WP_001219120.1 LytTR family DNA-binding domain-containing protein Regulator
  Q7621_RS02315 (Q7621_02320) - 455429..456769 (+) 1341 WP_001017642.1 sensor histidine kinase -
  Q7621_RS02320 (Q7621_02325) blpC 456840..456968 (-) 129 WP_000358815.1 quorum-sensing system pheromone BlpC -
  Q7621_RS02325 (Q7621_02330) - 457025..458386 (-) 1362 WP_001069060.1 bacteriocin secretion accessory protein -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 40546.58 Da        Isoelectric Point: 10.0008

>NTDB_id=791616 Q7621_RS02295 WP_000653774.1 452513..453562(+) (pptB) [Streptococcus pneumoniae strain 2008C09-280]
MKDLFLKRKQAFRKECLGYLRYVLNDHFVLFLLVLLGFLAYQYSQLLQHFPENHWPILLFVGITSVLLLLWGGIATYMEA
PDKLFLLVGEEEIKLHLKRQTGISLVFWLFVQTLFLLLFAPLFLAMGYGLPVFLLYVLLLGVGKYFHFRQKASKFFTETG
LDWDYVISQESKRKQVLLRFFALFTQVKGISNSVKRRAYLDFILKAVQKVSGKIWQNLYLRSYLRNGDLFALSLRLLLLS
VLAQVFIEQAWIATAVVVLFNYLLLFQLLALYHAFDYQYLTQLFPLDKGQKEKGLQEVVRGLTSFVLLVELVVGLITFQE
KLALLALLGAGLVLLVLYLPYQVKRQMQD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=791616 Q7621_RS02295 WP_000653774.1 452513..453562(+) (pptB) [Streptococcus pneumoniae strain 2008C09-280]
ATGAAAGACTTGTTTTTAAAGAGAAAGCAGGCCTTTCGTAAGGAGTGCCTTGGTTATCTGCGCTATGTGCTCAATGACCA
CTTTGTCTTGTTCCTGCTTGTCCTGTTGGGCTTTCTAGCCTACCAGTACAGTCAACTCTTACAACATTTTCCTGAAAATC
ATTGGCCTATCCTTTTGTTTGTAGGAATTACGTCTGTTTTACTTTTACTTTGGGGAGGAATTGCCACCTATATGGAGGCT
CCAGACAAGCTCTTTCTCTTAGTTGGAGAAGAGGAAATCAAGCTCCATCTCAAGCGTCAAACTGGCATTTCCCTAGTCTT
TTGGCTCTTTGTACAGACCCTTTTCTTGCTGTTATTTGCGCCTTTATTTTTAGCAATGGGTTATGGCTTGCCAGTTTTTC
TGCTCTATGTGCTTTTATTGGGGGTAGGAAAATATTTCCACTTTCGTCAAAAGGCCAGCAAATTTTTCACTGAAACTGGG
CTGGACTGGGACTATGTCATTTCCCAAGAAAGCAAGCGTAAGCAAGTCTTGCTTCGTTTCTTTGCCCTCTTTACGCAGGT
AAAGGGAATTTCAAACAGTGTCAAACGTCGTGCCTATCTGGACTTTATCTTAAAGGCTGTTCAGAAGGTGTCTGGAAAGA
TTTGGCAAAATCTCTATCTGCGTTCTTATCTGCGAAATGGCGACCTCTTTGCTCTCAGTCTTCGTCTTCTCTTACTTTCC
GTACTGGCGCAGGTTTTTATCGAGCAAGCTTGGATTGCGACAGCAGTGGTAGTTCTCTTTAACTACCTCTTGCTCTTCCA
GTTGCTGGCCCTCTATCATGCCTTTGACTACCAGTATTTGACCCAACTCTTTCCGCTGGACAAGGGGCAAAAGGAAAAAG
GCTTACAGGAGGTAGTTCGAGGATTGACCAGTTTTGTTTTACTTGTGGAATTAGTTGTTGGGTTGATTACCTTCCAAGAA
AAACTAGCCCTTCTAGCCTTACTAGGAGCTGGTTTGGTTTTACTAGTCTTGTATTTGCCTTATCAGGTAAAACGTCAGAT
GCAGGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

47.714

100

0.479

  pptB Streptococcus thermophilus LMD-9

46.857

100

0.47