Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   PVK49_RS06880 Genome accession   NZ_CP118306
Coordinates   1378618..1379427 (-) Length   269 a.a.
NCBI ID   WP_002985641.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 20154608     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1373618..1384427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVK49_RS06870 (PVK49_06860) smc 1373932..1377471 (-) 3540 WP_047235921.1 chromosome segregation protein SMC -
  PVK49_RS06875 (PVK49_06865) rnc 1377472..1378164 (-) 693 WP_002990670.1 ribonuclease III -
  PVK49_RS06880 (PVK49_06870) vicX 1378618..1379427 (-) 810 WP_002985641.1 MBL fold metallo-hydrolase Regulator
  PVK49_RS06885 (PVK49_06875) vicK 1379431..1380783 (-) 1353 WP_002990673.1 cell wall metabolism sensor histidine kinase VicK Regulator
  PVK49_RS06890 (PVK49_06880) vicR 1380776..1381486 (-) 711 WP_002985645.1 response regulator YycF Regulator
  PVK49_RS06895 (PVK49_06885) - 1381648..1382682 (-) 1035 WP_172448820.1 DUF3114 domain-containing protein -
  PVK49_RS06900 (PVK49_06890) - 1382738..1383985 (-) 1248 WP_014407393.1 AMP-binding protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30095.20 Da        Isoelectric Point: 5.5314

>NTDB_id=791482 PVK49_RS06880 WP_002985641.1 1378618..1379427(-) (vicX) [Streptococcus pyogenes strain 20154608]
MNESGFKYSILASGSTGNCFYLETPKKRLLIDAGLTGKKITSLLAEIDRKPEDLDAILITHEHSDHIKGVGVMARKYHLD
IYANEKTWQLMDECNMLGKLDASQKHIFQRDKVLTFGDVDIESFGVSHDAIDPQFYRIMKDNKSFVMLTDTGYVSDRMTG
IIENADGYLIESNHDIEILRSGSYPWSLKQRILSDLGHLSNEDGAGAMIRSLGYNTKKIYLGHLSKENNIKELAHMTMVN
QLAMADLAVGTDFTVHDTSPDTACPLTDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=791482 PVK49_RS06880 WP_002985641.1 1378618..1379427(-) (vicX) [Streptococcus pyogenes strain 20154608]
ATGAATGAGAGTGGTTTTAAATATAGTATTTTAGCATCTGGGTCCACAGGAAATTGTTTTTATTTAGAAACACCTAAAAA
ACGCTTATTGATTGATGCAGGGCTTACTGGTAAGAAAATTACCAGTCTTCTTGCTGAAATTGACCGCAAACCTGAGGATT
TGGATGCTATTTTGATTACCCATGAGCACTCTGACCATATTAAGGGTGTAGGCGTTATGGCCCGCAAATACCATTTGGAT
ATCTATGCTAATGAAAAAACATGGCAGCTGATGGATGAGTGCAATATGCTAGGTAAGCTTGATGCCTCACAAAAACATAT
TTTCCAAAGGGATAAAGTTTTGACCTTTGGAGATGTTGATATCGAAAGTTTTGGAGTCAGCCATGACGCTATTGATCCTC
AATTTTATCGGATTATGAAAGATAATAAGTCTTTTGTGATGTTGACAGATACAGGATATGTCAGTGATAGGATGACAGGT
ATTATTGAAAATGCAGATGGCTACTTGATTGAATCCAATCATGATATTGAAATTTTGAGATCAGGCTCTTATCCTTGGAG
CTTGAAGCAGCGTATTTTATCTGATTTAGGACATTTATCAAATGAAGATGGAGCGGGAGCCATGATTAGAAGCCTGGGGT
ACAATACCAAAAAAATATACCTAGGTCATCTGAGTAAAGAAAATAACATCAAAGAGTTAGCGCATATGACGATGGTCAAT
CAACTGGCTATGGCAGATTTAGCAGTAGGTACAGACTTTACGGTCCATGATACCTCTCCAGATACTGCTTGTCCATTAAC
TGATATTTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

75.836

100

0.758