Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HMP06_RS13620 Genome accession   NZ_AP022672
Coordinates   2793422..2793973 (-) Length   183 a.a.
NCBI ID   WP_176497562.1    Uniprot ID   A0A6S6G5W5
Organism   Sphingomonas sp. HMP6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2788422..2798973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMP06_RS13600 (HMP06_2696) - 2789664..2790797 (+) 1134 WP_176497558.1 homoserine O-acetyltransferase -
  HMP06_RS13605 (HMP06_2697) metW 2790794..2791420 (+) 627 WP_176497559.1 methionine biosynthesis protein MetW -
  HMP06_RS13610 (HMP06_2698) - 2791456..2791848 (+) 393 WP_176497560.1 response regulator -
  HMP06_RS13615 (HMP06_2699) - 2791867..2793390 (-) 1524 WP_176497561.1 PAS domain-containing protein -
  HMP06_RS13620 (HMP06_2700) ssb 2793422..2793973 (-) 552 WP_176497562.1 single-stranded DNA-binding protein Machinery gene
  HMP06_RS13625 (HMP06_2701) - 2793985..2795844 (-) 1860 WP_176497563.1 ferrous iron transporter B -
  HMP06_RS13630 (HMP06_2702) - 2795845..2796117 (-) 273 WP_176497564.1 FeoA family protein -
  HMP06_RS13635 (HMP06_2703) - 2796175..2796864 (-) 690 WP_176497565.1 COQ9 family protein -
  HMP06_RS13640 (HMP06_2704) - 2796875..2797786 (-) 912 WP_176497566.1 DMT family transporter -
  HMP06_RS13645 (HMP06_2705) - 2797845..2798933 (+) 1089 WP_176497567.1 alkene reductase -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 18693.31 Da        Isoelectric Point: 5.3096

>NTDB_id=79143 HMP06_RS13620 WP_176497562.1 2793422..2793973(-) (ssb) [Sphingomonas sp. HMP6]
MAGSVNKVIIVGNLGRDPESKSFQNGGKVVNLRIATSESWKDKNTGERKEQTEWHSVAIFNEALGGVAERYLRKGSKVYI
EGQLKTRKWQDAQGNDKYSTEIVLQGFNGVLTMLDGAPGGGSGGGGGGSSGRDDFGGNDDFGGGSSGGYGGGNRGGAARG
GGAPSGGAARGGFADDLDDDVPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=79143 HMP06_RS13620 WP_176497562.1 2793422..2793973(-) (ssb) [Sphingomonas sp. HMP6]
ATGGCGGGCAGCGTCAACAAGGTTATCATCGTCGGCAATCTCGGCCGCGATCCGGAGAGCAAGAGCTTCCAGAATGGCGG
CAAGGTCGTCAATCTGCGCATCGCCACGTCCGAATCGTGGAAGGACAAGAACACCGGCGAGCGCAAGGAACAGACCGAAT
GGCATTCGGTCGCGATCTTCAACGAAGCGTTGGGCGGCGTGGCCGAGCGCTATCTGCGCAAGGGCTCGAAAGTCTACATC
GAGGGCCAGCTCAAGACTCGCAAATGGCAGGACGCGCAGGGTAACGATAAATATTCGACCGAAATCGTGCTGCAGGGCTT
CAACGGCGTGCTGACGATGCTCGACGGCGCACCCGGCGGTGGTAGCGGCGGCGGCGGCGGCGGATCAAGCGGGCGCGACG
ATTTCGGCGGCAATGACGATTTCGGCGGTGGATCGAGCGGCGGCTATGGCGGTGGCAATCGCGGTGGCGCGGCGCGCGGC
GGCGGGGCTCCATCGGGCGGCGCGGCGCGCGGTGGCTTTGCCGACGATCTCGACGACGACGTTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6S6G5W5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.538

100

0.514
  ssb Vibrio cholerae strain A1552

48.066

98.907

0.475

Multiple sequence alignment