Detailed information NTG0791416

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HW458_RS20625
• Genome accession: NZ_CP118278
• Coordinates: 4244016..4244816 (+)
• Length: 266 a.a.
• NCBI ID: WP_017901157.1
• Uniprot ID: -
• Organism: Klebsiella quasipneumoniae strain IIIF3SW-P1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4239016..4249816

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HW458_RS20590 (HW458_020590)	gspH	4239169..4239684 (+)	516	WP_004204416.1	type II secretion system minor pseudopilin GspH	-
HW458_RS20595 (HW458_020595)	gspI	4239681..4240046 (+)	366	WP_004204415.1	type II secretion system minor pseudopilin GspI	-
HW458_RS20600 (HW458_020600)	gspJ	4240043..4240639 (+)	597	WP_032426022.1	type II secretion system minor pseudopilin GspJ	-
HW458_RS20605 (HW458_020605)	gspK	4240636..4241616 (+)	981	WP_205608895.1	type II secretion system minor pseudopilin GspK	-
HW458_RS20610 (HW458_020610)	gspL	4241609..4242805 (+)	1197	WP_205608894.1	type II secretion system protein GspL	-
HW458_RS20615 (HW458_020615)	-	4242798..4243283 (+)	486	WP_186933655.1	type II secretion system protein M	-
HW458_RS20620 (HW458_020620)	-	4243273..4244001 (+)	729	WP_205608892.1	type II secretion system protein N	-
HW458_RS20625 (HW458_020625)	pilD	4244016..4244816 (+)	801	WP_017901157.1	A24 family peptidase	Machinery gene
HW458_RS20630 (HW458_020630)	hrpB	4244864..4247293 (-)	2430	WP_032455567.1	ATP-dependent helicase HrpB	-
HW458_RS20635 (HW458_020635)	thpR	4247366..4247902 (+)	537	WP_004204405.1	RNA 2',3'-cyclic phosphodiesterase	-
HW458_RS20640 (HW458_020640)	sfsA	4247902..4248618 (+)	717	WP_151629162.1	DNA/RNA nuclease SfsA	-
HW458_RS20645 (HW458_020645)	dksA	4248781..4249236 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29338.86 Da
• Isoelectric Point: 8.8894

>NTDB_id=791416 HW458_RS20625 WP_017901157.1 4244016..4244816(+) (pilD) [Klebsiella quasipneumoniae strain IIIF3SW-P1]
MTTLAALSLHFPLVWYGFLLLFGLALGSFYNVVIYRLPRMLAQTADDEPLTLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQARISWSYPLTELTTGLLFILAGALLAPGLALAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQALPQVLLFASASGLTWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGVFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=791416 HW458_RS20625 WP_017901157.1 4244016..4244816(+) (pilD) [Klebsiella quasipneumoniae strain IIIF3SW-P1]
ATGACGACATTAGCCGCTTTATCGCTGCATTTCCCCCTTGTCTGGTATGGTTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAACGTGGTGATCTACCGTCTGCCGCGCATGCTGGCCCAGACCGCGGATGACGAGCCGCTAACCCTCAGCA
CGCCGGGCTCATCTTGTCCGCAGTGTCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGCTTCCTCTGGCTA
GGCCGTCGCGCCCGCTGCTGTCAGGCGCGCATCTCGTGGAGCTATCCGCTGACCGAGCTGACCACCGGCCTGCTGTTTAT
CCTCGCGGGGGCGCTGCTCGCGCCGGGACTGGCACTGGCGGGCGGCCTGGTGCTGCTCTCCTTTCTGCTGATACTGGCGC
GGATTGATGCCCGGACCCAGCTGCTGCCCGATCGCCTGACCCTGCCCCTGCTGTGGGCCGGACTGCTGTTTAATCTTAAC
GAGGTGTACATTGCGCTGCCGGACGCGGTCGCCGGGGCGATGGCTGGTTATCTGGCACTGTGGTCGGTCTATTGGCTGTT
CCGCCTGCTGACCGGCAAAGAGGCTCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGCTCTGCCGCAGGTGCTGTTGTTCGCCTCGGCCAGCGGGCTGACGTGGACCCTGCTGCAGCGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGAGGGGGCGTTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (123-230)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	45.818	100	0.474
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	44.867	98.872	0.444
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425