Detailed information NTG0791272

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HU251_RS20715
• Genome accession: NZ_CP118272
• Coordinates: 4272882..4273682 (+)
• Length: 266 a.a.
• NCBI ID: WP_065904237.1
• Uniprot ID: -
• Organism: Klebsiella quasipneumoniae strain IF2SW-P1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4267882..4278682

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HU251_RS20680 (HU251_020680)	gspH	4268035..4268550 (+)	516	WP_004204416.1	type II secretion system minor pseudopilin GspH	-
HU251_RS20685 (HU251_020685)	gspI	4268547..4268912 (+)	366	WP_069734362.1	type II secretion system minor pseudopilin GspI	-
HU251_RS20690 (HU251_020690)	gspJ	4268909..4269505 (+)	597	WP_065904245.1	type II secretion system minor pseudopilin GspJ	-
HU251_RS20695 (HU251_020695)	gspK	4269502..4270482 (+)	981	WP_175936600.1	type II secretion system minor pseudopilin GspK	-
HU251_RS20700 (HU251_020700)	gspL	4270475..4271671 (+)	1197	WP_062914383.1	type II secretion system protein GspL	-
HU251_RS20705 (HU251_020705)	-	4271664..4272149 (+)	486	WP_065904241.1	type II secretion system protein M	-
HU251_RS20710 (HU251_020710)	-	4272139..4272867 (+)	729	WP_065904239.1	type II secretion system protein N	-
HU251_RS20715 (HU251_020715)	pilD	4272882..4273682 (+)	801	WP_065904237.1	A24 family peptidase	Machinery gene
HU251_RS20720 (HU251_020720)	hrpB	4273730..4276159 (-)	2430	WP_065904235.1	ATP-dependent helicase HrpB	-
HU251_RS20725 (HU251_020725)	thpR	4276232..4276768 (+)	537	WP_004204405.1	RNA 2',3'-cyclic phosphodiesterase	-
HU251_RS20730 (HU251_020730)	sfsA	4276768..4277484 (+)	717	WP_004204404.1	DNA/RNA nuclease SfsA	-
HU251_RS20735 (HU251_020735)	dksA	4277647..4278102 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29390.94 Da
• Isoelectric Point: 8.6098

>NTDB_id=791272 HU251_RS20715 WP_065904237.1 4272882..4273682(+) (pilD) [Klebsiella quasipneumoniae strain IF2SW-P1]
MTTLAALSLHFPLIWYGFLLLFGLALGSFYNVVIYRLPRMLAQTADDEPLTLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
DRRARCCQARISWSYPLTELTTGLLFILAGALLAPGLALAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLVASASGLTWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGVFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=791272 HU251_RS20715 WP_065904237.1 4272882..4273682(+) (pilD) [Klebsiella quasipneumoniae strain IF2SW-P1]
ATGACGACATTAGCCGCATTATCGCTGCATTTCCCTCTAATCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAACGTGGTGATCTACCGTCTGCCGCGCATGCTGGCCCAGACCGCGGACGACGAGCCGCTAACCCTCAGCA
CGCCGGGCTCATCCTGTCCGCAGTGTCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGCTTCCTCTGGCTA
GACCGTCGCGCCCGCTGCTGTCAGGCGCGCATCTCGTGGAGCTATCCGCTGACCGAGCTGACCACCGGCCTGCTGTTTAT
CCTCGCGGGGGCGCTGCTCGCACCGGGACTGGCGCTGGCGGGCGGCCTGGTGCTGCTCTCCTTTCTGCTGATACTGGCGC
GGATTGATGCCCGGACCCAGCTGCTGCCCGATCGCCTGACCCTGCCCCTGCTGTGGGCCGGACTGCTGTTTAATCTTAAC
GAGGTGTACATTGCGCTGCCGGACGCGGTCGCCGGGGCGATGGCTGGTTATCTGGCGCTGTGGTCGGTCTATTGGCTGTT
CCGCCTGCTGACCGGCAAAGAGGCTCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTTTTGGTCGCCTCGGCCAGCGGGCTGACGTGGACCCTGCTGCAGCGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGAGGGGGCGTTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-230)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	45.818	100	0.474
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	44.867	98.872	0.444
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425