Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG/cglG   Type   Machinery gene
Locus tag   Q7626_RS09765 Genome accession   NZ_CP131707
Coordinates   1909392..1909805 (-) Length   137 a.a.
NCBI ID   WP_000265624.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 2018C08-270     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1904392..1914805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7626_RS09735 (Q7626_09720) - 1905087..1905911 (-) 825 WP_000727904.1 membrane protein insertase YidC -
  Q7626_RS09740 (Q7626_09725) rnpA 1905886..1906257 (-) 372 WP_000739246.1 ribonuclease P protein component -
  Q7626_RS09745 (Q7626_09730) - 1906274..1906405 (-) 132 WP_000768904.1 hypothetical protein -
  Q7626_RS09750 (Q7626_09735) - 1906406..1907596 (-) 1191 WP_000167766.1 acetate kinase -
  Q7626_RS09755 (Q7626_09740) comGH 1907647..1908600 (-) 954 WP_000345101.1 class I SAM-dependent methyltransferase Machinery gene
  Q7626_RS09760 (Q7626_09745) - 1908661..1909255 (-) 595 Protein_1897 methyltransferase domain-containing protein -
  Q7626_RS09765 (Q7626_09750) comGG/cglG 1909392..1909805 (-) 414 WP_000265624.1 competence type IV pilus minor pilin ComGG Machinery gene
  Q7626_RS09770 (Q7626_09755) comGF/cglF 1909783..1910244 (-) 462 WP_000250542.1 competence type IV pilus minor pilin ComGF Machinery gene
  Q7626_RS09775 (Q7626_09760) comGE/cglE 1910207..1910509 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  Q7626_RS09780 (Q7626_09765) comGD/cglD 1910472..1910876 (-) 405 WP_000588013.1 competence type IV pilus minor pilin ComGD Machinery gene
  Q7626_RS09785 (Q7626_09770) comGC/cglC 1910869..1911195 (-) 327 WP_000738636.1 comG operon protein ComGC Machinery gene
  Q7626_RS09790 (Q7626_09775) comGB/cglB 1911197..1912213 (-) 1017 WP_012512625.1 competence type IV pilus assembly protein ComGB Machinery gene
  Q7626_RS09795 (Q7626_09780) comGA/cglA/cilD 1912161..1913102 (-) 942 WP_000249552.1 competence type IV pilus ATPase ComGA Machinery gene
  Q7626_RS09800 (Q7626_09785) - 1913178..1913543 (-) 366 WP_000286415.1 DUF1033 family protein -
  Q7626_RS09805 (Q7626_09790) - 1913694..1914752 (-) 1059 WP_000649468.1 zinc-dependent alcohol dehydrogenase family protein -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 38279.88 Da        Isoelectric Point: 5.1855

>NTDB_id=791104 Q7626_RS09765 WP_000265624.1 1909392..1909805(-) (comGG/cglG) [Streptococcus pneumoniae strain 2018C08-270]
MWKKKKVKAGVLLYAVTIAAIFSLLLQFYLNRQVAHYQDYALNKEKLVAFAMAKRTKDKVEQESGEQVFNLGQVSYQNKK
TGLVTRVRTDKSQYEFLFPSVKIKEEKRDKKEEVATDSSEKVEKKKSEEKPEKKENS

Nucleotide


Download         Length: 414 bp        

>NTDB_id=791104 Q7626_RS09765 WP_000265624.1 1909392..1909805(-) (comGG/cglG) [Streptococcus pneumoniae strain 2018C08-270]
GTGTGGAAAAAGAAAAAAGTTAAGGCAGGTGTTCTCCTCTACGCAGTCACCATAGCAGCCATCTTTAGTCTTTTGTTGCA
ATTTTATTTGAACCGACAAGTCGCCCACTATCAAGACTATGCTTTGAATAAAGAAAAATTGGTTGCTTTTGCTATGGCTA
AACGAACCAAAGATAAGGTTGAGCAAGAAAGTGGGGAACAGGTTTTTAATCTAGGTCAGGTAAGCTATCAAAACAAGAAA
ACTGGCTTAGTGACGAGGGTTCGTACGGATAAGAGCCAATATGAGTTTCTGTTTCCTTCAGTCAAAATCAAAGAAGAGAA
AAGAGATAAAAAGGAAGAGGTAGCGACCGATTCAAGCGAAAAAGTGGAGAAGAAAAAATCAGAAGAGAAGCCTGAAAAGA
AAGAGAATTCCTAG

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

79.641

93.82

0.747
  recA Vibrio cholerae strain A1552

80.428

91.854

0.739
  recA Vibrio cholerae O1 biovar El Tor strain E7946

80.428

91.854

0.739
  recA Acinetobacter baylyi ADP1

75.229

91.854

0.691
  recA Acinetobacter baumannii D1279779

74.618

91.854

0.685
  recA Glaesserella parasuis strain SC1401

72.424

92.697

0.671
  recA Neisseria gonorrhoeae MS11

72.699

91.573

0.666
  recA Neisseria gonorrhoeae strain FA1090

72.699

91.573

0.666
  recA Ralstonia pseudosolanacearum GMI1000

73.333

88.483

0.649
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.743

96.067

0.612
  recA Streptococcus pneumoniae R6

62.573

96.067

0.601
  recA Streptococcus pneumoniae TIGR4

62.573

96.067

0.601
  recA Streptococcus pneumoniae Rx1

62.573

96.067

0.601
  recA Streptococcus pneumoniae D39

62.573

96.067

0.601
  recA Streptococcus mitis NCTC 12261

60.34

99.157

0.598
  recA Streptococcus mitis SK321

60.057

99.157

0.596
  recA Helicobacter pylori 26695

63.077

91.292

0.576
  recA Helicobacter pylori strain NCTC11637

63.077

91.292

0.576
  recA Bacillus subtilis subsp. subtilis str. 168

63.551

90.169

0.573
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.329

92.978

0.57
  recA Streptococcus mutans UA159

58.382

97.191

0.567
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.585

92.135

0.567
  recA Streptococcus pyogenes NZ131

61.61

90.73

0.559
  recA Latilactobacillus sakei subsp. sakei 23K

62.069

89.607

0.556
  recA Lactococcus lactis subsp. cremoris KW2

59.443

90.73

0.539