Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   Q7626_RS02350 Genome accession   NZ_CP131707
Coordinates   471225..472274 (+) Length   349 a.a.
NCBI ID   WP_000653771.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 2018C08-270     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 466225..477274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7626_RS02320 (Q7626_02315) - 467600..468004 (+) 405 WP_000343113.1 hypothetical protein -
  Q7626_RS02325 (Q7626_02320) dnaJ 468219..469355 (+) 1137 WP_001066295.1 molecular chaperone DnaJ -
  Q7626_RS02330 (Q7626_02325) - 469384..469560 (-) 177 WP_014931964.1 hypothetical protein -
  Q7626_RS02335 (Q7626_02330) - 469722..470009 (-) 288 WP_000777753.1 hypothetical protein -
  Q7626_RS02340 (Q7626_02335) - 470019..470429 (-) 411 WP_001278301.1 HIT family protein -
  Q7626_RS02345 (Q7626_02340) pptA 470497..471228 (+) 732 WP_000889957.1 ABC transporter ATP-binding protein Regulator
  Q7626_RS02350 (Q7626_02345) pptB 471225..472274 (+) 1050 WP_000653771.1 ABC transporter permease Regulator
  Q7626_RS02355 (Q7626_02350) - 472442..472771 (-) 330 WP_000132572.1 hypothetical protein -
  Q7626_RS02360 (Q7626_02355) - 473048..473386 (+) 339 WP_000876675.1 LytTR family DNA-binding domain-containing protein -
  Q7626_RS02365 (Q7626_02360) comE/blpR 473391..474128 (+) 738 WP_001219120.1 LytTR family DNA-binding domain-containing protein Regulator
  Q7626_RS02370 (Q7626_02365) - 474142..475482 (+) 1341 WP_001017636.1 sensor histidine kinase -
  Q7626_RS02375 (Q7626_02370) blpC 475553..475681 (-) 129 WP_000358815.1 quorum-sensing system pheromone BlpC -
  Q7626_RS02380 (Q7626_02375) - 475738..477099 (-) 1362 WP_001069075.1 bacteriocin secretion accessory protein -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 40556.62 Da        Isoelectric Point: 10.0008

>NTDB_id=791033 Q7626_RS02350 WP_000653771.1 471225..472274(+) (pptB) [Streptococcus pneumoniae strain 2018C08-270]
MKDLFLKRKQAFRKECLGYLRYVLNDHFVLFLLVLLGFLAYQYSQLLQHFPENHWPILLFVGITSVLLLLWGGIATYMEA
PDKLFLLVGEEEIKLHLKRQTGISLVFWLFVQTLFLLLFAPLFLAMGYGLPVFLLYVLLLGVGKYFHFRQKASKFFTETG
LDWDYVISQESKRKQVLLRFFALFTQVKGISNSVKRRAYLDFILKAVQKVPGKIWQNLYLRSYLRNGDLFALSLRLLLLS
VLAQVFIEQAWIATAVVVLFNYLLLFQLLALYHAFDYQYLTQLFPLDKGQKEKGLQEVVRGLTSFVLLVELVVGLITFQE
KLALLALLGAGLVLLVLYLPYQVKRQMQD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=791033 Q7626_RS02350 WP_000653771.1 471225..472274(+) (pptB) [Streptococcus pneumoniae strain 2018C08-270]
ATGAAAGACTTGTTTTTAAAGAGAAAGCAGGCCTTTCGTAAGGAGTGTCTTGGTTATCTGCGCTATGTGCTCAATGACCA
CTTTGTCTTGTTCCTGCTTGTCCTGTTGGGCTTTCTAGCCTACCAGTACAGTCAACTCTTACAACATTTTCCTGAAAATC
ATTGGCCTATCCTTTTGTTTGTAGGAATTACGTCTGTTTTACTTTTACTTTGGGGAGGAATTGCCACCTATATGGAGGCT
CCAGACAAGCTCTTTCTCTTAGTTGGAGAAGAGGAAATCAAGCTCCATCTCAAGCGTCAAACTGGCATTTCCCTAGTCTT
TTGGCTCTTTGTACAGACCCTTTTCTTGCTGTTATTTGCGCCTTTATTTTTAGCAATGGGTTATGGCTTGCCAGTTTTTC
TGCTCTATGTGCTTTTATTGGGGGTAGGAAAATATTTCCACTTTCGTCAAAAGGCCAGCAAATTTTTCACTGAAACTGGA
CTGGACTGGGACTATGTTATTTCTCAAGAAAGCAAGCGTAAGCAAGTCTTGCTTCGTTTCTTTGCCCTCTTTACGCAGGT
CAAGGGAATTTCAAACAGCGTTAAGCGTCGTGCCTATCTGGACTTTATCTTAAAGGCTGTTCAGAAGGTGCCTGGGAAGA
TTTGGCAAAATCTCTATCTGCGTTCTTATCTGCGAAATGGCGACCTCTTTGCTCTCAGTCTTCGTCTTCTATTACTTTCC
GTACTGGCGCAGGTTTTTATCGAGCAAGCTTGGATTGCGACAGCAGTGGTAGTTCTCTTTAACTACCTCTTGCTCTTCCA
GTTGCTGGCCCTCTATCATGCCTTTGACTACCAGTATTTGACCCAACTCTTTCCGCTGGACAAGGGGCAAAAGGAAAAAG
GCTTACAGGAGGTAGTTCGAGGATTGACCAGTTTTGTTTTACTTGTGGAATTAGTTGTTGGGTTGATTACCTTCCAAGAA
AAACTGGCCCTTCTAGCCTTACTAGGAGCTGGTTTGGTTTTACTAGTCTTGTATTTGCCTTATCAGGTAAAACGTCAGAT
GCAGGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

47.714

100

0.479

  pptB Streptococcus thermophilus LMD-9

46.857

100

0.47