Detailed information NTG0790954

Bioinformatically predicted

Overview

• Name: med
• Type: Regulator
• Locus tag: PUW21_RS06105
• Genome accession: NZ_CP118167
• Coordinates: 1182211..1183164 (+)
• Length: 317 a.a.
• NCBI ID: WP_014476425.1
• Uniprot ID: A0A0K6M9I2
• Organism: Bacillus subtilis strain 21855
• Function: regulation of regulators (predicted from homology) Competence regulation

Genomic Context

Location: 1177211..1188164

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PUW21_RS06080 (PUW21_06080)	argF	1179044..1180003 (+)	960	WP_229762431.1	ornithine carbamoyltransferase	-
PUW21_RS06085 (PUW21_06085)	yjzC	1180089..1180268 (+)	180	WP_003245356.1	YjzC family protein	-
PUW21_RS06090 (PUW21_06090)	yjzD	1180314..1180499 (-)	186	WP_003245236.1	DUF2929 domain-containing protein	-
PUW21_RS06095 (PUW21_06095)	-	1180748..1181482 (+)	735	WP_032721340.1	hypothetical protein	-
PUW21_RS06100 (PUW21_06100)	-	1181564..1182121 (+)	558	WP_229762430.1	hypothetical protein	-
PUW21_RS06105 (PUW21_06105)	med	1182211..1183164 (+)	954	WP_014476425.1	transcriptional regulator Med	Regulator
PUW21_RS06110 (PUW21_06110)	comZ	1183179..1183370 (+)	192	WP_003224559.1	ComG operon transcriptional repressor ComZ	Regulator
PUW21_RS06115 (PUW21_06115)	yjzB	1183400..1183639 (-)	240	WP_003232972.1	spore coat protein YjzB	-
PUW21_RS06120 (PUW21_06120)	fabH	1183804..1184742 (+)	939	WP_003232971.1	beta-ketoacyl-ACP synthase III	-
PUW21_RS06125 (PUW21_06125)	fabF	1184765..1186006 (+)	1242	WP_003244890.1	beta-ketoacyl-ACP synthase II	-
PUW21_RS06130 (PUW21_06130)	yjaZ	1186082..1186867 (+)	786	WP_033883592.1	DUF2268 domain-containing protein	-
PUW21_RS06135 (PUW21_06135)	appD	1187059..1188045 (+)	987	WP_229762429.1	oligopeptide ABC transporter ATP-binding protein AppD	-

Sequence

Protein

• Length: 317 a.a.
• Molecular weight: 35310.84 Da
• Isoelectric Point: 4.6031

>NTDB_id=790954 PUW21_RS06105 WP_014476425.1 1182211..1183164(+) (med) [Bacillus subtilis strain 21855]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTEEDIINAIED
FHKRGVNLLYGHGSEYAEVFNLVGEDYPDMEFVISNAKAKADNVTSVHFSGEAMGFFGGMTAAHMSKTNQVGVIASFTWQ
PEVDGFIKGAKYENPDIEVNTKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYYDLNTGVVEMGTFSPLVDKDFQQRIAKLIKTYNKTGELPKNE

Nucleotide

• Length: 954 bp

>NTDB_id=790954 PUW21_RS06105 WP_014476425.1 1182211..1183164(+) (med) [Bacillus subtilis strain 21855]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGTGGATGTGGACAAACTCCGTTCAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGTACAAAAGGGTATAAAGGATTACTGAATA
TACAATCCAAATACAATGTGGACGTCTATTATAAAGAAGGCGTTAAAACAGAAGAAGATATCATAAATGCGATTGAGGAT
TTTCATAAGAGGGGCGTCAATCTGCTCTACGGCCATGGGAGTGAATATGCTGAGGTGTTTAACTTGGTCGGCGAAGATTA
TCCAGATATGGAATTCGTCATTTCCAATGCGAAAGCGAAAGCTGATAATGTAACGAGTGTCCATTTTAGCGGGGAAGCAA
TGGGCTTTTTTGGAGGAATGACTGCTGCCCATATGTCGAAAACGAATCAGGTCGGTGTAATTGCTTCCTTTACGTGGCAG
CCTGAGGTTGACGGTTTTATCAAAGGGGCCAAGTATGAAAATCCGGATATAGAGGTAAATACGAAATATACGGATCATTG
GGATGATGATACAACAGCAGTAAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCCGCCGGAGACG
GGTATAATGTTCCTGTTATTCAGCAAATCAAAAAAGACGGTCTTTATGCCATTGGCTACGTCACAGATCAATCGGATCTG
GGCGAGAATACCGTATTAACCAGCACGGTGCAAAATGTGGACAAGGCCTATGAAATCATTGCTGAACAATTTAATAAAGG
CACCCTTGAGGGCGGCGATCATTACTACGACCTGAATACGGGAGTCGTTGAGATGGGAACATTCAGCCCGCTCGTCGACA
AAGACTTTCAGCAAAGAATCGCCAAGCTGATCAAAACATACAACAAAACAGGCGAGCTGCCAAAAAACGAGTAA

Domains

Predicted by InterproScan.

• ABC transporter substrate-binding protein PnrA-like (Bmp) (27-317)

3D structure

• AlphaFold DB: A0A0K6M9I2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
med	Bacillus subtilis subsp. subtilis str. 168	99.685	100	0.997