Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   PUW21_RS01975 Genome accession   NZ_CP118167
Coordinates   371388..371786 (-) Length   132 a.a.
NCBI ID   WP_015715226.1    Uniprot ID   A0AA96URL7
Organism   Bacillus subtilis strain 21855     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 366388..376786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW21_RS01945 (PUW21_01945) yckA 366964..367644 (-) 681 WP_024572176.1 amino acid ABC transporter permease -
  PUW21_RS01950 (PUW21_01950) yckB 367654..368517 (-) 864 WP_029727074.1 transporter substrate-binding domain-containing protein -
  PUW21_RS01955 (PUW21_01955) - 368678..368875 (+) 198 WP_128992271.1 hypothetical protein -
  PUW21_RS01960 (PUW21_01960) yckC 368895..369350 (+) 456 WP_048654748.1 RDD family protein -
  PUW21_RS01965 (PUW21_01965) yckD 369432..369764 (+) 333 WP_015252849.1 YckD family protein -
  PUW21_RS01970 (PUW21_01970) bglC 369918..371351 (+) 1434 WP_048654749.1 6-phospho-beta-glucosidase -
  PUW21_RS01975 (PUW21_01975) nin/comJ 371388..371786 (-) 399 WP_015715226.1 DNA-entry nuclease inhibitor Regulator
  PUW21_RS01980 (PUW21_01980) nucA/comI 371813..372262 (-) 450 WP_003234608.1 DNA-entry nuclease Machinery gene
  PUW21_RS01985 (PUW21_01985) tlpC 372430..374151 (-) 1722 WP_048654750.1 methyl-accepting chemotaxis protein TlpC -
  PUW21_RS01990 (PUW21_01990) hxlB 374262..374819 (-) 558 WP_235120625.1 6-phospho-3-hexuloisomerase -
  PUW21_RS01995 (PUW21_01995) hxlA 374825..375457 (-) 633 WP_003246452.1 3-hexulose-6-phosphate synthase -
  PUW21_RS02000 (PUW21_02000) hxlR 375689..376051 (+) 363 WP_235120624.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14935.90 Da        Isoelectric Point: 4.8991

>NTDB_id=790934 PUW21_RS01975 WP_015715226.1 371388..371786(-) (nin/comJ) [Bacillus subtilis strain 21855]
MIKSWKPQELSISYHQFTVFQKDSTPPVMDWTDEAIEKGYAAADGAISFEAQRNTKAFILLRLNSSETVSSYEKKVTVPF
HVTENGIHIESIMSKRLSFDLPKGDYQLTCWTVPAEMSDLHADTYIIDAVSV

Nucleotide


Download         Length: 399 bp        

>NTDB_id=790934 PUW21_RS01975 WP_015715226.1 371388..371786(-) (nin/comJ) [Bacillus subtilis strain 21855]
TTGATCAAATCATGGAAGCCGCAAGAACTTTCGATTTCATATCATCAATTTACTGTATTTCAAAAGGATTCTACACCTCC
TGTAATGGATTGGACTGACGAAGCGATTGAAAAAGGATATGCTGCGGCAGACGGAGCCATTTCCTTTGAGGCACAGCGAA
ATACAAAGGCCTTTATTCTTTTGCGCCTGAACAGTTCAGAAACAGTAAGCTCCTACGAAAAAAAAGTGACTGTTCCTTTT
CATGTCACAGAAAACGGAATTCATATTGAAAGCATCATGTCTAAAAGACTGTCCTTTGATCTGCCTAAAGGAGACTATCA
ATTGACATGCTGGACTGTGCCGGCTGAAATGTCAGATTTGCACGCCGACACTTATATTATTGATGCTGTTTCTGTGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

98.485

100

0.985