Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   PTA87_RS08495 Genome accession   NZ_CP118163
Coordinates   1729248..1730129 (-) Length   293 a.a.
NCBI ID   WP_107633182.1    Uniprot ID   A0A2T4RIM6
Organism   Staphylococcus hyicus strain SG-7     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1724248..1735129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PTA87_RS08480 xerC 1724755..1725645 (-) 891 WP_039646062.1 tyrosine recombinase XerC -
  PTA87_RS08485 trmFO 1725767..1727071 (-) 1305 WP_274311796.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  PTA87_RS08490 topA 1727084..1729153 (-) 2070 WP_039646065.1 type I DNA topoisomerase -
  PTA87_RS08495 dprA 1729248..1730129 (-) 882 WP_107633182.1 DNA-processing protein DprA Machinery gene
  PTA87_RS08500 sucD 1730671..1731579 (-) 909 WP_039646070.1 succinate--CoA ligase subunit alpha -
  PTA87_RS08505 sucC 1731601..1732767 (-) 1167 WP_037564702.1 ADP-forming succinate--CoA ligase subunit beta -
  PTA87_RS08510 - 1732980..1733249 (-) 270 WP_039646074.1 hypothetical protein -
  PTA87_RS08515 - 1733336..1734112 (-) 777 WP_420802202.1 ribonuclease HII -
  PTA87_RS08520 ylqF 1734102..1734983 (-) 882 WP_039647653.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 293 a.a.        Molecular weight: 33231.68 Da        Isoelectric Point: 9.8094

>NTDB_id=790878 PTA87_RS08495 WP_107633182.1 1729248..1730129(-) (dprA) [Staphylococcus hyicus strain SG-7]
MLLKNLIRLCYAGFTTQQLYRLFKKPLDVLTNDITQTLHQRITYENHPLFHTKLQKFNALNASQILCQLRQAHITPITIL
NDQYPRLLKEIYQPPLILFCKGNLSLLNAASYKLAIVGARDCTQYGDEAVRYLLQKMKRASIIVVSGLAKGTDALAHYNA
LKNEMPTIGVLGFGHQYHYPSETKPLRHTLETNQLGLTISEYPPMTPPAKFRFPERNRIISGISHGVLVTEAKERSGALI
TLDQALEQNRNVYVLPGDMFNKHTKGNMMRVKEGAEIVLSAEDILKDMNTSIR

Nucleotide


Download         Length: 882 bp        

>NTDB_id=790878 PTA87_RS08495 WP_107633182.1 1729248..1730129(-) (dprA) [Staphylococcus hyicus strain SG-7]
GTGCTACTAAAAAATTTAATAAGATTATGTTACGCAGGATTTACGACACAACAACTTTATCGTCTTTTCAAAAAACCATT
GGACGTGTTAACCAATGACATCACACAGACATTGCACCAGCGTATTACTTATGAAAATCATCCTTTGTTTCATACCAAAC
TCCAAAAATTCAACGCGCTAAATGCCTCTCAAATTCTATGTCAGCTACGGCAGGCTCACATTACGCCAATTACAATTTTA
AATGATCAATATCCACGTCTCTTAAAAGAAATCTACCAGCCACCCTTAATATTATTTTGCAAAGGTAACCTTTCGCTATT
AAACGCAGCTTCATATAAATTAGCGATAGTAGGTGCACGCGATTGTACGCAATATGGAGATGAAGCTGTACGTTATTTGC
TTCAAAAGATGAAGCGTGCTTCCATTATTGTTGTATCAGGACTTGCTAAAGGTACGGATGCACTTGCACATTACAATGCA
TTGAAAAATGAGATGCCTACTATAGGTGTGTTAGGTTTTGGGCATCAATATCATTATCCTTCTGAAACAAAACCATTACG
CCATACATTAGAAACGAACCAACTTGGTTTAACTATTAGTGAATATCCTCCTATGACCCCACCGGCTAAGTTTCGTTTTC
CTGAGCGCAATCGTATAATTAGTGGGATAAGCCATGGGGTTTTAGTGACAGAAGCGAAAGAGCGAAGCGGTGCACTTATT
ACACTAGATCAAGCACTAGAACAAAATAGGAATGTATATGTATTACCTGGAGATATGTTTAATAAGCATACAAAAGGTAA
TATGATGCGTGTTAAAGAAGGGGCTGAAATCGTACTCTCGGCTGAAGATATTTTAAAAGATATGAATACGTCAATTCGGT
GA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(69-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T4RIM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus N315

50.175

97.27

0.488
  dprA Staphylococcus aureus MW2

49.825

97.27

0.485