Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   Q7631_RS20215 Genome accession   NZ_CP131685
Coordinates   4171992..4172729 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 2016C04-116     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4166992..4177729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7631_RS20200 (Q7631_20185) clpC 4167446..4170019 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  Q7631_RS20205 (Q7631_20190) yfiH 4170149..4170880 (-) 732 WP_000040156.1 purine nucleoside phosphorylase YfiH -
  Q7631_RS20210 (Q7631_20195) rluD 4170877..4171857 (-) 981 WP_000079111.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  Q7631_RS20215 (Q7631_20200) comL 4171992..4172729 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  Q7631_RS20220 (Q7631_20205) raiA 4172999..4173340 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  Q7631_RS20225 (Q7631_20210) pheL 4173444..4173491 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  Q7631_RS20230 (Q7631_20215) pheA 4173590..4174750 (+) 1161 WP_000200124.1 bifunctional chorismate mutase/prephenate dehydratase -
  Q7631_RS20235 (Q7631_20220) tyrA 4174793..4175914 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  Q7631_RS20240 (Q7631_20225) aroF 4175925..4176995 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  Q7631_RS20245 (Q7631_20230) yfiL 4177205..4177570 (+) 366 WP_001296308.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=790877 Q7631_RS20215 WP_000197686.1 4171992..4172729(+) (comL) [Escherichia coli strain 2016C04-116]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=790877 Q7631_RS20215 WP_000197686.1 4171992..4172729(+) (comL) [Escherichia coli strain 2016C04-116]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCACCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376