Detailed information NTG0790840

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: PUP74_RS27345
• Genome accession: NZ_CP118156
• Coordinates: 6052015..6053343 (+)
• Length: 442 a.a.
• NCBI ID: WP_274302083.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis strain ATCC 15926
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 6047015..6058343

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PUP74_RS27325 (PUP74_27325)	pgeF	6048504..6049229 (-)	726	WP_274302084.1	peptidoglycan editing factor PgeF	-
PUP74_RS27330 (PUP74_27330)	rluD	6049226..6050188 (-)	963	WP_007924719.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
PUP74_RS27335 (PUP74_27335)	-	6050340..6051362 (+)	1023	WP_007924720.1	outer membrane protein assembly factor BamD	-
PUP74_RS27340 (PUP74_27340)	-	6051497..6051730 (+)	234	WP_062824555.1	PP0621 family protein	-
PUP74_RS27345 (PUP74_27345)	pilR	6052015..6053343 (+)	1329	WP_274302083.1	sigma-54-dependent transcriptional regulator	Regulator
PUP74_RS27350 (PUP74_27350)	thiO	6053340..6054440 (-)	1101	WP_274302082.1	glycine oxidase ThiO	-
PUP74_RS27355 (PUP74_27355)	-	6054495..6054896 (-)	402	WP_007924724.1	type IV pilin protein	-
PUP74_RS27360 (PUP74_27360)	-	6054910..6057981 (-)	3072	WP_274302081.1	pilus assembly protein	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48841.47 Da
• Isoelectric Point: 9.6259

>NTDB_id=790840 PUP74_RS27345 WP_274302083.1 6052015..6053343(+) (pilR) [Pseudomonas chlororaphis strain ATCC 15926]
MSPRQKVLIVDDDPGIREYLEISLGRMQRHTRSARTLGEARHWLAREGFDLCLSDLHLPDGTGLELLEHIQCRQLRMPLA
ILSTCARQETAVHALKAGAIDFLSKPVALARLRELLNGALPGSIPPNPATGPLLGDSAAMHKLRGQIGKLARSQASVYIS
GESGSGKELVARAIHDLGPRARHAFVPVNCGAIPPELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDVRILCATHKALLAEVHAGRFRQDLYYRLNVIELPVPALRARKADIEPLATAILE
RLAQGNGQQLARLQPSALQVLQGYDFPGNVRELENLLERAHTLCENRRIEARDLRLTPNGAHPAITPGPAQVINLEKHLQ
EVERRLILQALEHTRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=790840 PUP74_RS27345 WP_274302083.1 6052015..6053343(+) (pilR) [Pseudomonas chlororaphis strain ATCC 15926]
ATGAGCCCACGACAAAAAGTCTTGATCGTCGATGACGATCCAGGCATTCGCGAATATCTGGAAATCAGCCTCGGCCGGAT
GCAACGCCATACCCGCAGCGCCCGCACCCTGGGCGAAGCGCGTCACTGGCTGGCGCGGGAAGGCTTCGACCTGTGCCTGA
GCGACCTGCATTTGCCCGACGGCACGGGGCTGGAATTACTCGAGCATATCCAGTGCCGCCAGCTGCGAATGCCGCTGGCA
ATACTCAGCACCTGCGCCCGCCAGGAAACCGCGGTCCACGCCCTGAAGGCCGGCGCCATCGACTTCCTGAGCAAGCCCGT
GGCCCTGGCGCGCTTGCGCGAGCTGCTGAATGGCGCCCTGCCCGGATCGATACCACCGAACCCTGCCACCGGCCCATTGC
TCGGCGATTCGGCCGCCATGCACAAACTGCGCGGACAAATCGGCAAACTGGCCCGGAGCCAGGCCTCGGTCTATATCAGC
GGAGAGTCCGGAAGCGGCAAGGAACTGGTCGCCCGCGCGATCCACGACCTGGGTCCTCGGGCCAGACACGCCTTCGTGCC
GGTCAATTGCGGAGCCATCCCACCGGAACTGATGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGCGCTA
TCGAAGACAAGCCCGGCCTGTTCCAGGCAGCGCACGGCGGCACGCTGTTTCTCGATGAGGTGGCCGATCTGCCGCTGGCG
ATGCAGGTCAAATTGCTCCGCGCGCTGCAGGAGAAGGCGGTACGTTGCGTCGGCGGGCAACAGGAGGTCCAGGTCGATGT
ACGCATTCTCTGCGCCACCCACAAGGCGTTGCTGGCGGAAGTGCATGCCGGGCGCTTTCGCCAGGATCTCTACTACCGCC
TGAACGTGATCGAGTTGCCGGTGCCAGCGCTACGGGCGCGCAAGGCTGATATCGAACCCTTGGCCACCGCCATCCTCGAG
CGCCTGGCGCAGGGTAACGGCCAACAACTGGCACGGCTTCAGCCAAGCGCGCTGCAAGTGCTCCAGGGCTACGACTTTCC
CGGTAACGTGCGCGAACTGGAGAACTTGCTCGAACGGGCACACACCCTGTGCGAGAACCGGCGGATCGAAGCACGCGACC
TGCGCCTGACACCAAACGGCGCCCACCCGGCCATCACGCCCGGACCGGCACAGGTGATCAACCTTGAGAAACATCTGCAA
GAAGTCGAGCGCCGACTGATCCTCCAGGCCCTGGAGCACACCCGCTGGAACCGCACGGCGGCGGCCCAGCGCTTGAGCTT
GTCGTTTCGTTCGATGCGCTACCGGCTGAAGAAACTCGGCCTGGATTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

• Sigma-54 interaction domain (Sigma54_activat) (134-299)

• Response regulator receiver domain (Response_reg) (7-116)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	67.269	100	0.674
pilR	Acinetobacter baumannii strain A118	43.601	100	0.455