Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PUP74_RS09880 Genome accession   NZ_CP118156
Coordinates   2180129..2180764 (+) Length   211 a.a.
NCBI ID   WP_007931657.1    Uniprot ID   A0AAX2DUM3
Organism   Pseudomonas chlororaphis strain ATCC 15926     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2175129..2185764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUP74_RS09860 (PUP74_09860) - 2175374..2176306 (+) 933 WP_007931649.1 ABC transporter ATP-binding protein -
  PUP74_RS09865 (PUP74_09865) - 2176303..2177082 (+) 780 WP_007931651.1 ABC transporter permease -
  PUP74_RS09870 (PUP74_09870) - 2177131..2177646 (-) 516 WP_007931653.1 DUF2062 domain-containing protein -
  PUP74_RS09875 (PUP74_09875) comA 2177795..2180026 (+) 2232 WP_274301256.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PUP74_RS09880 (PUP74_09880) exbB 2180129..2180764 (+) 636 WP_007931657.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PUP74_RS09885 (PUP74_09885) - 2180761..2181189 (+) 429 WP_007931660.1 ExbD/TolR family protein -
  PUP74_RS09890 (PUP74_09890) lpxK 2181189..2182199 (+) 1011 WP_274301255.1 tetraacyldisaccharide 4'-kinase -
  PUP74_RS09895 (PUP74_09895) - 2182222..2182407 (+) 186 WP_007931663.1 Trm112 family protein -
  PUP74_RS09900 (PUP74_09900) kdsB 2182404..2183168 (+) 765 WP_123573894.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PUP74_RS09905 (PUP74_09905) - 2183168..2183632 (+) 465 WP_007931667.1 low molecular weight protein-tyrosine-phosphatase -
  PUP74_RS09910 (PUP74_09910) murB 2183629..2184648 (+) 1020 WP_274301254.1 UDP-N-acetylmuramate dehydrogenase -
  PUP74_RS09915 (PUP74_09915) - 2184896..2185366 (+) 471 WP_025804349.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22947.12 Da        Isoelectric Point: 8.1069

>NTDB_id=790831 PUP74_RS09880 WP_007931657.1 2180129..2180764(+) (exbB) [Pseudomonas chlororaphis strain ATCC 15926]
MWELVKSGGWMMLPIILSSIVAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKDKLKELRAHSPLGEILAAGLAN
SKHGREVMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTSNAAVLAGGISKALITTA
SGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=790831 PUP74_RS09880 WP_007931657.1 2180129..2180764(+) (exbB) [Pseudomonas chlororaphis strain ATCC 15926]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATTGTCGCGGTCGGCATCATTGC
CGAGCGTCTATGGACCCTGCGGGCCAGCCGCGTTACCCCGCCTCATCTGCTGGGCCAGGTGTGGCGTTGGATCAAGGACA
AACAGCTGAACAAGGACAAGCTCAAGGAACTGCGCGCCCATTCGCCCCTGGGCGAGATCCTGGCCGCCGGCCTGGCCAAC
TCCAAGCATGGCCGCGAGGTTATGAAAGAGTGCATCGAGGAAGCCGCCGCCCGGGTCATCCACGAACTGGAGCGCTACCT
CAATGCCCTCGGCACCATCGCCGCCATGGCCCCGCTGCTGGGCTTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGCTCGGGGATGACCAGCAACGCCGCGGTGCTGGCCGGTGGTATCTCCAAGGCGCTGATCACCACCGCG
TCCGGCCTGATGGTCGGTATTCCGGCAGTGTTCTTCCACCGTTTCCTGCAACGCCGGGTCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCCATCAAGCTGGTCGAAGTGGTGCAGGGCGACCGCGATGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.73

100

0.867