Detailed information NTG0790830

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: PUP74_RS09875
• Genome accession: NZ_CP118156
• Coordinates: 2177795..2180026 (+)
• Length: 743 a.a.
• NCBI ID: WP_274301256.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis strain ATCC 15926
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2172795..2185026

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PUP74_RS09850 (PUP74_09850)	-	2173916..2174575 (+)	660	WP_253363192.1	transglutaminase-like domain-containing protein	-
PUP74_RS09855 (PUP74_09855)	-	2174618..2175241 (+)	624	WP_009042835.1	glutathione S-transferase family protein	-
PUP74_RS09860 (PUP74_09860)	-	2175374..2176306 (+)	933	WP_007931649.1	ABC transporter ATP-binding protein	-
PUP74_RS09865 (PUP74_09865)	-	2176303..2177082 (+)	780	WP_007931651.1	ABC transporter permease	-
PUP74_RS09870 (PUP74_09870)	-	2177131..2177646 (-)	516	WP_007931653.1	DUF2062 domain-containing protein	-
PUP74_RS09875 (PUP74_09875)	comA	2177795..2180026 (+)	2232	WP_274301256.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
PUP74_RS09880 (PUP74_09880)	exbB	2180129..2180764 (+)	636	WP_007931657.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
PUP74_RS09885 (PUP74_09885)	-	2180761..2181189 (+)	429	WP_007931660.1	ExbD/TolR family protein	-
PUP74_RS09890 (PUP74_09890)	lpxK	2181189..2182199 (+)	1011	WP_274301255.1	tetraacyldisaccharide 4'-kinase	-
PUP74_RS09895 (PUP74_09895)	-	2182222..2182407 (+)	186	WP_007931663.1	Trm112 family protein	-
PUP74_RS09900 (PUP74_09900)	kdsB	2182404..2183168 (+)	765	WP_123573894.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
PUP74_RS09905 (PUP74_09905)	-	2183168..2183632 (+)	465	WP_007931667.1	low molecular weight protein-tyrosine-phosphatase	-
PUP74_RS09910 (PUP74_09910)	murB	2183629..2184648 (+)	1020	WP_274301254.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 81049.07 Da
• Isoelectric Point: 9.9596

>NTDB_id=790830 PUP74_RS09875 WP_274301256.1 2177795..2180026(+) (comA) [Pseudomonas chlororaphis strain ATCC 15926]
MRTGMLAFAAGLLSLRFLPALPAIGWLAVLPVVALMLLPFRTYPLALFLLGLAWACISAQSALDDRLAEPLDGQTRWLEG
RVVGLPQQAEGLVRFELEDGRARRGRIPQRLRLAWYGGPPVHSGERWRLAVKLKRPAGLVNLQAFDHEAWLLAQRIGATG
TVKDGQLLAAPRESWRARIRQRLLQVDAHGRAGGLAALVLGDGSGLSQEDWRVLQDTGTVHLMVISGQHISLLAAVMYAL
VAGLARYGLWPGRWPWLPWACGLAFASALGYGLLAGFDVPVRRACVMVALVLIWRLRFRHLGAWWPFLLALNAVLLFEPL
ASLQPGFWLSFTAVAVLILIFGGRLGGWRWWQSWTRIQWLIAIGLCPVLLALGLPISLSGPLANLLAEPWISLLVLPPAL
LGTLLLAVPYLGEGLLWLAGGLLDLLFRGLTLLAAQWPAWVAPAIPLWAWSISALGALLLLLPAGVPLRPLGWPMLLLVV
FPPKSTLPYGEAEVWQLDVGQGLAVLVRTREHAMLYDAGPRFGDSDLGARVVLPSLRKLGVARLDLMLLSHADADHAGGA
DAIQRGLPVARLVSGDPEGLPAYLPAEPCASGEQWQWDGVRFSLWQWAGAQNGNQKSCVMQVEAQGERLLLTGDIDALAE
RALLDTPLAVETHWLQAPHHGSRSSSSAALLKALAPSAVLISRGHGNGFGHPHPQVVERYRQQGTAIYDSAEQGALRLML
GTYTEPTSLRAQRRFWRKWPLSP

Nucleotide

• Length: 2232 bp

>NTDB_id=790830 PUP74_RS09875 WP_274301256.1 2177795..2180026(+) (comA) [Pseudomonas chlororaphis strain ATCC 15926]
ATGCGCACAGGGATGCTGGCGTTTGCGGCGGGGCTTTTGAGCCTGCGCTTTTTGCCGGCGCTGCCAGCGATCGGATGGTT
GGCAGTGCTGCCGGTAGTAGCCTTGATGCTGTTGCCGTTTCGCACCTATCCATTGGCCCTTTTTCTGTTGGGCCTGGCGT
GGGCCTGCATCAGCGCGCAATCGGCGCTGGATGATCGTTTGGCGGAACCACTCGACGGGCAGACTCGCTGGCTCGAAGGG
CGGGTGGTGGGGCTGCCGCAGCAGGCCGAGGGGCTGGTGCGTTTCGAGCTGGAAGACGGGCGGGCGCGGCGCGGGCGAAT
CCCGCAACGCCTGCGCCTGGCCTGGTATGGCGGGCCGCCGGTGCACAGCGGCGAACGCTGGCGCCTGGCGGTGAAGCTCA
AGCGACCTGCCGGCCTGGTCAATCTGCAGGCCTTCGATCACGAGGCCTGGTTGCTGGCCCAGCGCATCGGCGCCACGGGT
ACGGTCAAGGATGGGCAATTGCTGGCCGCCCCCCGGGAGAGTTGGCGTGCGCGCATTCGCCAGCGCTTGCTGCAAGTCGA
TGCCCACGGGCGCGCCGGCGGCCTGGCGGCCCTGGTGCTGGGCGACGGTTCGGGCTTGAGCCAGGAAGACTGGCGTGTCT
TGCAAGACACCGGGACCGTGCACCTGATGGTGATTTCCGGGCAGCACATCAGCTTGCTGGCCGCAGTGATGTACGCCCTG
GTGGCGGGGCTGGCCCGCTACGGCCTGTGGCCCGGACGCTGGCCCTGGCTGCCCTGGGCCTGCGGGCTGGCATTCGCCTC
GGCCCTGGGGTACGGGTTGCTGGCGGGGTTCGATGTGCCGGTGCGCCGTGCCTGTGTGATGGTGGCCCTGGTGCTGATCT
GGCGCCTGCGCTTTCGCCACCTGGGCGCCTGGTGGCCGTTCTTGCTGGCATTGAATGCGGTGCTGTTGTTCGAGCCGCTG
GCCAGCCTGCAGCCAGGCTTCTGGCTGTCCTTTACCGCGGTGGCGGTGCTGATCCTGATCTTTGGCGGGCGCCTGGGAGG
CTGGCGCTGGTGGCAGTCCTGGACCCGTATTCAATGGTTGATCGCCATCGGCCTGTGCCCGGTGCTGCTGGCGCTGGGGT
TGCCCATCAGTCTCAGCGGGCCGCTGGCCAATCTGCTGGCGGAACCCTGGATCAGCCTGCTGGTGCTGCCGCCGGCGTTG
CTCGGCACCTTGTTGCTGGCGGTGCCTTACCTGGGCGAAGGCTTGCTCTGGCTGGCCGGTGGCTTGCTGGACCTGCTGTT
TCGCGGCTTGACCCTGCTGGCTGCCCAGTGGCCGGCGTGGGTAGCGCCGGCCATACCGCTCTGGGCCTGGAGCATCAGCG
CGCTGGGAGCCTTGCTGCTGTTGCTGCCCGCGGGCGTGCCGCTGCGTCCCTTGGGCTGGCCGATGCTGCTGTTGGTGGTG
TTCCCGCCGAAAAGCACGCTGCCATATGGCGAGGCGGAAGTCTGGCAACTGGATGTCGGGCAGGGCCTGGCGGTGCTGGT
ACGGACTCGCGAGCACGCGATGCTGTATGACGCCGGTCCGCGTTTTGGCGATTCCGACCTGGGCGCGCGGGTAGTGTTGC
CGTCCTTGCGCAAGCTGGGAGTCGCGCGCCTCGACCTGATGCTGCTCAGCCACGCCGATGCCGATCATGCCGGTGGCGCC
GACGCCATCCAGCGCGGCTTGCCGGTGGCCAGGCTGGTCAGCGGCGATCCCGAGGGTTTGCCGGCCTATTTACCGGCAGA
GCCTTGCGCCAGCGGCGAGCAGTGGCAATGGGACGGGGTGCGTTTTTCCCTGTGGCAATGGGCAGGTGCGCAGAACGGTA
ACCAGAAGTCCTGCGTGATGCAGGTCGAGGCCCAGGGCGAGCGTTTGCTGCTGACGGGGGATATCGATGCCCTGGCCGAA
CGCGCCTTGCTGGATACCCCGCTGGCCGTCGAGACCCACTGGTTGCAGGCGCCGCACCATGGCAGCCGCAGCTCGTCGTC
CGCGGCCCTGCTCAAGGCCCTTGCGCCTTCGGCGGTGCTGATCTCCCGTGGGCACGGCAATGGGTTTGGGCATCCGCACC
CGCAGGTCGTCGAACGTTATCGTCAGCAAGGGACCGCTATTTACGACAGTGCGGAGCAGGGAGCGCTGCGGCTGATGCTG
GGCACTTACACCGAACCGACGAGCCTGCGGGCGCAGCGGCGCTTTTGGCGCAAATGGCCACTATCTCCTTAA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

• Competence protein (Competence) (198-463)

• Domain of unknown function (DUF4131) (DUF4131) (23-167)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.812	96.77	0.627