Detailed information NTG0790812

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PUP78_RS28990
• Genome accession: NZ_CP118155
• Coordinates: 6446262..6447134 (+)
• Length: 290 a.a.
• NCBI ID: WP_063433051.1
• Uniprot ID: A0AAX3FYP7
• Organism: Pseudomonas chlororaphis strain ATCC 17411
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 6441262..6452134

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PUP78_RS28975 (PUP78_28975)	-	6443616..6443972 (-)	357	WP_124325535.1	BON domain-containing protein	-
PUP78_RS28980 (PUP78_28980)	-	6444262..6444678 (-)	417	WP_025807491.1	pilin	-
PUP78_RS28985 (PUP78_28985)	pilC	6445042..6446259 (+)	1218	WP_124325536.1	type II secretion system F family protein	Machinery gene
PUP78_RS28990 (PUP78_28990)	pilD	6446262..6447134 (+)	873	WP_063433051.1	prepilin peptidase	Machinery gene
PUP78_RS28995 (PUP78_28995)	coaE	6447131..6447754 (+)	624	WP_124325537.1	dephospho-CoA kinase	-
PUP78_RS29000 (PUP78_29000)	yacG	6447751..6447954 (+)	204	WP_009045670.1	DNA gyrase inhibitor YacG	-
PUP78_RS29005 (PUP78_29005)	-	6447959..6448174 (-)	216	WP_025807496.1	hypothetical protein	-
PUP78_RS29010 (PUP78_29010)	-	6448240..6448929 (-)	690	WP_124325538.1	energy-coupling factor ABC transporter permease	-
PUP78_RS29015 (PUP78_29015)	-	6448926..6449393 (-)	468	WP_102677068.1	FAD/FMN-containing dehydrogenase	-
PUP78_RS29020 (PUP78_29020)	-	6449849..6451285 (+)	1437	WP_063433055.1	undecaprenyl-phosphate glucose phosphotransferase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32068.19 Da
• Isoelectric Point: 7.9950

>NTDB_id=790812 PUP78_RS28990 WP_063433051.1 6446262..6447134(+) (pilD) [Pseudomonas chlororaphis strain ATCC 17411]
MSLTEVLASYPLVFVASVLVLGLIVGSFLNVLIWRLPKMLERDWHAQARDILGLPVEPAGPTYNLLLPHSQCPHCAHPIR
PWENIPVFSYLLLRGRCSACKAPIGRRYPLVELTCGLASAFVAWHFGFGWQAGLMLFLSWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIVNGFDLFVSLHDALWGAVAGYLCLWSVYWLFKLLTGKEGMGHGDFKLLAMFGAWGGWQILPMTLLLASLTG
ALAGVAMLRRNRAQMSTPIPFGPFLAIAGWIALLWGGQITDSYLQFVGFR

Nucleotide

• Length: 873 bp

>NTDB_id=790812 PUP78_RS28990 WP_063433051.1 6446262..6447134(+) (pilD) [Pseudomonas chlororaphis strain ATCC 17411]
ATGTCATTGACTGAGGTCTTGGCCAGCTACCCGCTGGTCTTCGTAGCATCGGTGCTGGTCCTGGGCCTGATTGTCGGCAG
CTTCCTCAACGTGCTGATCTGGCGGCTGCCAAAGATGCTCGAGCGTGACTGGCATGCCCAGGCCCGTGACATCCTGGGGC
TGCCCGTCGAACCTGCCGGGCCGACCTACAACCTGTTGCTCCCGCACTCCCAGTGCCCTCACTGCGCGCACCCGATCCGC
CCCTGGGAAAACATCCCAGTGTTCAGCTACCTGCTGCTGCGCGGACGCTGCTCCGCGTGCAAGGCACCGATCGGCCGGCG
CTATCCGCTGGTGGAGTTGACCTGCGGCCTGGCCTCGGCGTTCGTGGCCTGGCATTTCGGCTTTGGCTGGCAGGCCGGCT
TGATGCTGTTCCTGAGTTGGGGCCTGTTGGCGATGAGCCTGATCGATGCCGACCATCAACTGTTGCCCGACGTGCTGGTA
CTGCCCCTGTTGTGGCTGGGGCTGATCGTCAATGGCTTCGACCTGTTCGTCAGCCTCCACGATGCGCTGTGGGGCGCCGT
GGCCGGCTACCTGTGCCTGTGGTCGGTGTACTGGCTGTTCAAGCTGCTGACCGGCAAGGAAGGCATGGGGCACGGCGATT
TCAAGCTGTTGGCCATGTTCGGCGCCTGGGGCGGCTGGCAGATTCTGCCGATGACCCTGCTGCTGGCCTCACTGACGGGG
GCCCTGGCCGGGGTCGCCATGCTGCGCCGCAACCGCGCGCAAATGTCCACGCCTATCCCTTTCGGTCCCTTTCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTCCTATTTGCAGTTTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.873	97.931	0.528
pilD	Vibrio campbellii strain DS40M4	51.773	97.241	0.503
pilD	Acinetobacter baumannii D1279779	50.185	93.448	0.469
pilD	Acinetobacter nosocomialis M2	49.446	93.448	0.462
pilD	Neisseria gonorrhoeae MS11	47.794	93.793	0.448