Detailed information NTG0790772

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: PUP71_RS08970
• Genome accession: NZ_CP118154
• Coordinates: 1972422..1974653 (-)
• Length: 743 a.a.
• NCBI ID: WP_053260193.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis strain ATCC 17414
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1967422..1979653

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PUP71_RS08935 (PUP71_08935)	murB	1967800..1968819 (-)	1020	WP_053260196.1	UDP-N-acetylmuramate dehydrogenase	-
PUP71_RS08940 (PUP71_08940)	-	1968816..1969280 (-)	465	WP_007931667.1	low molecular weight protein-tyrosine-phosphatase	-
PUP71_RS08945 (PUP71_08945)	kdsB	1969280..1970044 (-)	765	WP_053260195.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
PUP71_RS08950 (PUP71_08950)	-	1970041..1970226 (-)	186	WP_007931663.1	Trm112 family protein	-
PUP71_RS08955 (PUP71_08955)	lpxK	1970249..1971259 (-)	1011	WP_053260194.1	tetraacyldisaccharide 4'-kinase	-
PUP71_RS08960 (PUP71_08960)	-	1971259..1971687 (-)	429	WP_007931660.1	ExbD/TolR family protein	-
PUP71_RS08965 (PUP71_08965)	exbB	1971684..1972319 (-)	636	WP_007931657.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
PUP71_RS08970 (PUP71_08970)	comA	1972422..1974653 (-)	2232	WP_053260193.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
PUP71_RS08975 (PUP71_08975)	-	1974802..1975317 (+)	516	WP_053260192.1	DUF2062 domain-containing protein	-
PUP71_RS08980 (PUP71_08980)	-	1975366..1976145 (-)	780	WP_007931651.1	ABC transporter permease	-
PUP71_RS08985 (PUP71_08985)	-	1976142..1977074 (-)	933	WP_007931649.1	ABC transporter ATP-binding protein	-
PUP71_RS08990 (PUP71_08990)	-	1977207..1977830 (-)	624	WP_053260191.1	glutathione S-transferase family protein	-
PUP71_RS08995 (PUP71_08995)	-	1977873..1978532 (-)	660	WP_007931646.1	transglutaminase-like domain-containing protein	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 81142.21 Da
• Isoelectric Point: 9.7323

>NTDB_id=790772 PUP71_RS08970 WP_053260193.1 1972422..1974653(-) (comA) [Pseudomonas chlororaphis strain ATCC 17414]
MRTGMLALAAGLLCLRFLPALPAIGWLAVLPVVALMLLPFRTYPLALFLLGLAWACISAQWALDDRLAEPLDGQTHWLEG
RVVGLPQQTEGLVRFELEDGRARRGRIPQRLRLAWYGGPPVHSGERWRLAVKLKRPAGLVNLQAFDHEAWLLAQRIGATG
TVKDGQLLATTRESWRARIRQRLLQVDAHGRAGGLAALVLGDGSGLSQEDWRVLQDTGTVHLMVISGQHISLLAAVMYAL
VAGLARYGLWPGRWPWLPWACGLAFASALGYGLLAGFDVPVRRACVMVALVLIWRLRFRHLGAWWPFLLALNAVLLFEPL
ASLQPGFWLSFTAVAVLILIFGGRLGGWRWWQSWTRIQWLIAIGLCPVLLALGLPISLSGPLANLLAEPWISLLVLPPAL
LGTLLLAVPYLGEGLLWLAGGLLDLLFRGLTLLAAQWPAWVAPAIPLWAWSISALGALLLLLPAGVPLRPLGWPMLLLVV
FPPKNTLPYGEAEVWQLDVGQGLAVLVRTREHAMLYDAGPRFGDSDLGARVVLPSLRKLGVAHLDLMLLSHADADHAGGA
DAISRGLPVARLVSGDPEGLPAYLPAEPCASGEQWQWDGVRFSLWQWAGAQNGNQKSCVMQVEAKGERLLLTGDIDALAE
RALLDTPLAVETHWLQAPHHGSRSSSSAALLKALAPSAVLISRGHGNGFGHPHPQVVERYRQQGTAIYDSAEQGALRLML
GTYTEPTSLRAQRRFWRKWPLSP

Nucleotide

• Length: 2232 bp

>NTDB_id=790772 PUP71_RS08970 WP_053260193.1 1972422..1974653(-) (comA) [Pseudomonas chlororaphis strain ATCC 17414]
ATGCGCACAGGGATGCTGGCGTTGGCGGCGGGGCTTTTATGCCTGCGCTTTTTGCCGGCGCTACCAGCGATCGGATGGCT
GGCAGTGCTGCCGGTGGTGGCCTTGATGCTGTTGCCGTTTCGCACCTATCCATTGGCCCTCTTTCTGTTGGGCCTGGCGT
GGGCCTGCATCAGCGCGCAATGGGCGCTGGATGATCGTTTGGCGGAACCGCTCGACGGGCAGACTCACTGGCTCGAAGGT
CGAGTGGTGGGGCTGCCGCAGCAGACCGAGGGGCTGGTGCGTTTCGAGCTGGAAGACGGGCGGGCGCGGCGCGGCCGGAT
CCCGCAACGCCTGCGCCTGGCCTGGTATGGCGGGCCGCCGGTGCACAGCGGCGAACGCTGGCGCCTGGCGGTGAAGCTCA
AGCGACCTGCCGGCCTGGTCAATCTGCAGGCCTTCGATCACGAGGCCTGGTTGCTGGCCCAGCGCATCGGCGCCACGGGC
ACGGTCAAGGATGGGCAATTGCTGGCCACCACCCGGGAGAGTTGGCGTGCGCGCATTCGCCAGCGCTTGCTGCAAGTCGA
TGCCCATGGGCGCGCCGGCGGCCTGGCGGCCCTGGTACTGGGCGACGGCTCGGGCTTGAGCCAGGAAGACTGGCGTGTCT
TGCAAGACACCGGGACCGTGCACCTGATGGTGATTTCCGGGCAGCACATCAGCTTGCTGGCCGCGGTGATGTACGCCCTG
GTGGCGGGGCTGGCCCGTTACGGCCTGTGGCCCGGACGCTGGCCCTGGCTGCCCTGGGCCTGTGGACTGGCGTTCGCTTC
GGCCCTGGGGTACGGATTGCTGGCGGGGTTCGATGTGCCGGTGCGCCGTGCCTGCGTGATGGTGGCCCTGGTGCTGATCT
GGCGCCTGCGCTTTCGCCACCTGGGTGCCTGGTGGCCGTTCCTGCTGGCATTGAATGCGGTGCTGTTGTTCGAGCCGCTG
GCCAGTCTGCAGCCAGGTTTCTGGCTGTCCTTTACCGCGGTGGCGGTGCTGATCCTGATCTTCGGCGGGCGCCTGGGAGG
CTGGCGCTGGTGGCAGTCCTGGACCCGCATTCAATGGTTGATCGCCATCGGCCTGTGCCCGGTGCTGCTGGCGCTGGGGT
TGCCCATCAGTCTCAGCGGGCCGCTGGCCAATCTGCTGGCGGAACCCTGGATCAGCCTGCTGGTGCTGCCGCCGGCGTTG
CTCGGCACCTTGTTGCTGGCGGTGCCTTACCTGGGCGAAGGCTTGCTCTGGCTGGCCGGTGGTTTGCTGGACCTGCTGTT
CCGCGGCCTGACCCTGCTGGCTGCCCAGTGGCCGGCGTGGGTAGCGCCGGCCATACCGCTCTGGGCCTGGAGCATCAGCG
CGCTGGGAGCCTTGCTGCTGTTGCTGCCTGCGGGCGTGCCGCTGCGTCCCTTGGGCTGGCCGATGCTGCTGTTGGTGGTG
TTCCCGCCGAAAAACACGCTGCCATATGGCGAGGCGGAAGTCTGGCAGCTGGATGTCGGGCAGGGCCTGGCGGTGCTGGT
ACGGACTCGCGAGCACGCGATGCTGTATGACGCCGGTCCGCGTTTTGGCGATTCCGACCTGGGCGCGCGGGTGGTGCTGC
CGTCCTTGCGCAAGCTGGGCGTCGCGCACCTCGACCTGATGCTGCTCAGCCACGCCGATGCCGATCATGCCGGTGGCGCC
GACGCCATTTCGCGCGGCTTGCCGGTGGCCAGGCTGGTCAGCGGCGATCCCGAGGGTTTGCCGGCCTATTTACCGGCAGA
GCCTTGCGCCAGCGGCGAGCAGTGGCAATGGGACGGGGTGCGTTTTTCCCTGTGGCAATGGGCAGGTGCGCAGAACGGTA
ACCAGAAGTCCTGCGTGATGCAGGTCGAGGCCAAGGGCGAGCGTTTGCTGCTGACGGGGGATATCGATGCCCTGGCCGAG
CGCGCCTTGCTGGATACCCCGCTGGCCGTCGAGACCCACTGGTTGCAGGCGCCGCATCACGGCAGCCGCAGCTCGTCGTC
CGCGGCCCTGCTCAAGGCCCTTGCGCCTTCGGCGGTGCTGATTTCCCGTGGGCACGGCAATGGGTTTGGGCATCCGCACC
CGCAGGTCGTCGAACGTTATCGCCAGCAAGGGACCGCCATTTACGACAGTGCGGAGCAGGGAGCGCTGCGGCTGATGCTG
GGCACCTACACCGAACCGACGAGCCTGCGGGCGCAGCGGCGCTTTTGGCGCAAATGGCCACTATCTCCTTAA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (20-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

• Competence protein (Competence) (198-463)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.534	96.77	0.624