Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PUP71_RS08965 Genome accession   NZ_CP118154
Coordinates   1971684..1972319 (-) Length   211 a.a.
NCBI ID   WP_007931657.1    Uniprot ID   A0AAX2DUM3
Organism   Pseudomonas chlororaphis strain ATCC 17414     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1966684..1977319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUP71_RS08930 (PUP71_08930) - 1967081..1967551 (-) 471 WP_053260197.1 (2Fe-2S)-binding protein -
  PUP71_RS08935 (PUP71_08935) murB 1967800..1968819 (-) 1020 WP_053260196.1 UDP-N-acetylmuramate dehydrogenase -
  PUP71_RS08940 (PUP71_08940) - 1968816..1969280 (-) 465 WP_007931667.1 low molecular weight protein-tyrosine-phosphatase -
  PUP71_RS08945 (PUP71_08945) kdsB 1969280..1970044 (-) 765 WP_053260195.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PUP71_RS08950 (PUP71_08950) - 1970041..1970226 (-) 186 WP_007931663.1 Trm112 family protein -
  PUP71_RS08955 (PUP71_08955) lpxK 1970249..1971259 (-) 1011 WP_053260194.1 tetraacyldisaccharide 4'-kinase -
  PUP71_RS08960 (PUP71_08960) - 1971259..1971687 (-) 429 WP_007931660.1 ExbD/TolR family protein -
  PUP71_RS08965 (PUP71_08965) exbB 1971684..1972319 (-) 636 WP_007931657.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PUP71_RS08970 (PUP71_08970) comA 1972422..1974653 (-) 2232 WP_053260193.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PUP71_RS08975 (PUP71_08975) - 1974802..1975317 (+) 516 WP_053260192.1 DUF2062 domain-containing protein -
  PUP71_RS08980 (PUP71_08980) - 1975366..1976145 (-) 780 WP_007931651.1 ABC transporter permease -
  PUP71_RS08985 (PUP71_08985) - 1976142..1977074 (-) 933 WP_007931649.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22947.12 Da        Isoelectric Point: 8.1069

>NTDB_id=790771 PUP71_RS08965 WP_007931657.1 1971684..1972319(-) (exbB) [Pseudomonas chlororaphis strain ATCC 17414]
MWELVKSGGWMMLPIILSSIVAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKDKLKELRAHSPLGEILAAGLAN
SKHGREVMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTSNAAVLAGGISKALITTA
SGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=790771 PUP71_RS08965 WP_007931657.1 1971684..1972319(-) (exbB) [Pseudomonas chlororaphis strain ATCC 17414]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATTGTCGCGGTCGGCATCATTGC
CGAGCGTCTGTGGACCCTGCGGGCCAGCCGCGTTACCCCGCCTCATCTGCTGGGCCAGGTGTGGCGCTGGATCAAGGACA
AACAGCTGAACAAGGACAAGCTCAAGGAGCTGCGCGCCCATTCGCCTCTGGGCGAGATCCTGGCCGCCGGCCTGGCCAAC
TCCAAGCATGGCCGCGAGGTCATGAAAGAGTGCATCGAGGAAGCCGCCGCCCGGGTCATCCACGAACTGGAGCGCTACCT
CAATGCCCTCGGCACTATCGCCGCCATGGCCCCGCTGCTGGGCTTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GTTCGTTCATGGGCTCGGGCATGACCAGCAACGCCGCGGTGCTGGCCGGTGGTATCTCCAAGGCGCTGATCACCACCGCG
TCCGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGTTTCCTGCAACGCCGGGTCGATGAGCTGGTGGTTGGCAT
GGAGCAGGAAGCCATCAAACTGGTCGAAGTGGTGCAGGGCGACCGCGACGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.73

100

0.867