Detailed information NTG0790762

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: PUP50_RS29155
• Genome accession: NZ_CP118153
• Coordinates: 6376365..6377693 (+)
• Length: 442 a.a.
• NCBI ID: WP_274304675.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis strain ATCC 17811
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 6371365..6382693

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PUP50_RS29135 (PUP50_29135)	pgeF	6372858..6373583 (-)	726	WP_274304674.1	peptidoglycan editing factor PgeF	-
PUP50_RS29140 (PUP50_29140)	rluD	6373580..6374542 (-)	963	WP_007924719.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
PUP50_RS29145 (PUP50_29145)	-	6374694..6375716 (+)	1023	WP_007924720.1	outer membrane protein assembly factor BamD	-
PUP50_RS29150 (PUP50_29150)	-	6375850..6376083 (+)	234	WP_007924721.1	PP0621 family protein	-
PUP50_RS29155 (PUP50_29155)	pilR	6376365..6377693 (+)	1329	WP_274304675.1	sigma-54-dependent transcriptional regulator	Regulator
PUP50_RS29160 (PUP50_29160)	thiO	6377690..6378790 (-)	1101	WP_274304676.1	glycine oxidase ThiO	-
PUP50_RS29165 (PUP50_29165)	-	6378845..6379246 (-)	402	WP_007924724.1	type IV pilin protein	-
PUP50_RS29170 (PUP50_29170)	-	6379260..6382331 (-)	3072	WP_274304677.1	pilus assembly protein	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48880.29 Da
• Isoelectric Point: 9.0161

>NTDB_id=790762 PUP50_RS29155 WP_274304675.1 6376365..6377693(+) (pilR) [Pseudomonas chlororaphis strain ATCC 17811]
MSPRQKVLIVDDDPGIREYLEISLGRMQRHTRSARTLGEARHWLAREGFDLCLSDLHLPDGTGLELLEHIQCRQLRMPLA
ILSTCARQETAIHALKAGAIDFLSKPVALARLRELLNGALSGSTPPNPASGPLLGDSAAMHKLRGQIDKLARSQTSVYIS
GESGSGKELVARAIHDQGPRASHAFVPVNCGAIPPELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDVRILCATHKALQAEVHAGRFRQDLYYRLNVIELPVPALRARKADIEPLATAILE
RLAQGNDQQLARLQPNALLALQGYDFPGNVRELENLLERAHILCENRRIEARDLRLTPNGAHPAITPGPAQGINLEKHLQ
EVERRLILQALEHTRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=790762 PUP50_RS29155 WP_274304675.1 6376365..6377693(+) (pilR) [Pseudomonas chlororaphis strain ATCC 17811]
ATGAGCCCACGACAAAAAGTCTTGATCGTCGATGACGATCCAGGCATTCGCGAATATCTGGAAATCAGCCTCGGCCGGAT
GCAACGCCATACCCGCAGCGCCCGCACCCTGGGCGAAGCGCGTCACTGGCTGGCCCGGGAAGGCTTCGACCTGTGCCTGA
GCGACCTGCATTTGCCCGACGGCACGGGACTGGAATTACTCGAGCATATCCAGTGCCGCCAGCTGCGAATGCCGCTGGCA
ATACTCAGCACCTGCGCCCGCCAGGAAACCGCGATCCACGCCCTGAAGGCCGGCGCCATCGACTTCCTGAGCAAACCCGT
GGCCCTGGCGCGCTTGCGCGAGCTGCTGAATGGCGCCCTGTCCGGATCGACACCACCGAACCCTGCTAGCGGTCCATTGC
TCGGCGATTCGGCCGCCATGCACAAGCTGCGCGGACAAATCGACAAACTGGCCCGGAGCCAGACCTCGGTCTATATCAGC
GGAGAGTCCGGAAGCGGCAAGGAACTGGTCGCCCGCGCAATCCACGACCAGGGTCCTCGAGCCAGCCACGCCTTCGTGCC
GGTCAATTGCGGAGCCATCCCACCGGAACTGATGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGCGCTA
TCGAAGACAAGCCCGGCCTGTTCCAGGCGGCGCACGGCGGCACGCTGTTTCTCGATGAGGTGGCCGATCTGCCGCTGGCG
ATGCAAGTCAAATTGCTCCGCGCGCTGCAGGAGAAGGCGGTGCGGTGCGTCGGTGGGCAGCAGGAAGTCCAGGTCGATGT
GCGCATTCTCTGCGCCACCCACAAGGCGCTGCAGGCGGAAGTGCATGCCGGGCGCTTTCGCCAGGATCTCTACTACCGCC
TGAACGTGATCGAGCTGCCGGTGCCAGCGCTACGGGCGCGCAAGGCTGATATCGAACCCTTGGCCACCGCCATTCTCGAG
CGCCTGGCGCAGGGCAACGACCAACAACTGGCGCGGCTTCAGCCAAACGCGTTGCTGGCGCTCCAGGGCTACGACTTTCC
CGGTAACGTGCGCGAACTGGAGAACCTGCTCGAACGGGCGCACATCCTGTGCGAGAACCGGCGGATCGAAGCACGCGACC
TGCGCCTGACGCCCAACGGCGCCCACCCGGCCATCACGCCCGGCCCGGCACAGGGGATCAACCTTGAGAAACATCTGCAA
GAAGTCGAGCGCCGACTGATCCTCCAGGCCCTGGAGCACACCCGCTGGAACCGCACGGCGGCGGCCCAGCGCTTGAGCCT
GTCGTTTCGTTCGATGCGCTACCGGCTGAAGAAACTCGGCCTGGATTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

• Sigma-54 interaction domain (Sigma54_activat) (134-299)

• Response regulator receiver domain (Response_reg) (7-116)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	66.817	100	0.67
pilR	Acinetobacter baumannii strain A118	43.818	100	0.457