Detailed information NTG0790752

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: PUP50_RS10590
• Genome accession: NZ_CP118153
• Coordinates: 2329271..2331502 (+)
• Length: 743 a.a.
• NCBI ID: WP_274305984.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis strain ATCC 17811
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2324271..2336502

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PUP50_RS10565 (PUP50_10565)	-	2325392..2326051 (+)	660	WP_274305982.1	transglutaminase-like domain-containing protein	-
PUP50_RS10570 (PUP50_10570)	-	2326094..2326717 (+)	624	WP_274305983.1	glutathione S-transferase family protein	-
PUP50_RS10575 (PUP50_10575)	-	2326850..2327782 (+)	933	WP_007931649.1	ABC transporter ATP-binding protein	-
PUP50_RS10580 (PUP50_10580)	-	2327779..2328558 (+)	780	WP_007931651.1	ABC transporter permease	-
PUP50_RS10585 (PUP50_10585)	-	2328607..2329122 (-)	516	WP_053260192.1	DUF2062 domain-containing protein	-
PUP50_RS10590 (PUP50_10590)	comA	2329271..2331502 (+)	2232	WP_274305984.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
PUP50_RS10595 (PUP50_10595)	exbB	2331605..2332240 (+)	636	WP_007931657.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
PUP50_RS10600 (PUP50_10600)	-	2332237..2332665 (+)	429	WP_274305985.1	ExbD/TolR family protein	-
PUP50_RS10605 (PUP50_10605)	lpxK	2332665..2333675 (+)	1011	WP_274305986.1	tetraacyldisaccharide 4'-kinase	-
PUP50_RS10610 (PUP50_10610)	-	2333698..2333883 (+)	186	WP_007931663.1	Trm112 family protein	-
PUP50_RS10615 (PUP50_10615)	kdsB	2333880..2334644 (+)	765	WP_274305987.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
PUP50_RS10620 (PUP50_10620)	-	2334644..2335108 (+)	465	WP_274305988.1	low molecular weight protein-tyrosine-phosphatase	-
PUP50_RS10625 (PUP50_10625)	murB	2335105..2336124 (+)	1020	WP_274305989.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 81154.12 Da
• Isoelectric Point: 9.8518

>NTDB_id=790752 PUP50_RS10590 WP_274305984.1 2329271..2331502(+) (comA) [Pseudomonas chlororaphis strain ATCC 17811]
MRTGMLAFAAGLLSLRFLPALPAIGWLAVLPVVALMLLPFRTYPLALFLLGLAWACISAQSALDDRLAEPLDGQTRWLEG
RVVGLPQQAEGLVRFELEDGRARRGRIPQRLRLAWYGGPPVHSGERWRLAVKLKRPAGLVNLQAFDHEAWLLAQRIGATG
TVKDGQLLAATRESWRARIRQRLLQVDAHGRSGGLAALVLGDGSGLSQEDWRVLQDTGTVHLMVISGQHISLLAAVMYAL
VAGLARYGLWPGRWPWLPWACGLAFASALGYGLLAGFDVPVRRACVMVALVLIWRLRFRHLGAWWPFLLALNAVLLFEPL
ASLQPGFWLSFTAVAVLILVFGGRLGGWRWWQSWTRIQWLIAIGLCPVLLALGLPISLSGPLANLLAEPWISLLVLPPAL
LGTLLLAVPYLGEGLLWLAGGLLDLLFRGLTLLAAQWPAWIAPAIPLWAWSISALGALLLLLPAGVPLRPLGWPMLLLVV
FPPKNTLPYGEAEVWQLDVGQGLAVLVRTREHAMLYDAGPRFGDSDLGARVVLPSLRKLGVARLDLMLLSHADADHAGGA
DAIQRGLPVARLVSGDPEGLPAYLPAEPCASGEQWQWDGVRFSLWQWAGAQNGNQKSCVMQVEAQGERLLLTGDIDALAE
RALLDTPLAVETHWLQAPHHGSRSSSSEALLKALAPSAVLISRGHGNGFGHPHPQVVERYRQQGTAIYDSAEQGALRLML
GTYTEPTSLRAQRRFWRKWPLSP

Nucleotide

• Length: 2232 bp

>NTDB_id=790752 PUP50_RS10590 WP_274305984.1 2329271..2331502(+) (comA) [Pseudomonas chlororaphis strain ATCC 17811]
ATGCGCACAGGGATGCTGGCGTTTGCGGCGGGGCTTTTGAGCCTGCGCTTTTTGCCGGCGCTGCCAGCGATCGGATGGCT
GGCAGTGCTGCCGGTAGTGGCCTTGATGCTGCTACCGTTTCGCACCTATCCATTGGCCCTTTTTCTGTTGGGCTTGGCGT
GGGCCTGCATCAGCGCGCAATCGGCGCTGGATGATCGTTTGGCGGAACCACTCGACGGGCAGACTCGCTGGCTCGAAGGT
CGAGTGGTGGGGTTGCCGCAGCAGGCCGAGGGGCTGGTGCGTTTCGAGCTGGAAGACGGGCGGGCGCGGCGCGGCCGGAT
CCCGCAACGCCTGCGCCTGGCCTGGTATGGCGGGCCGCCGGTGCACAGCGGCGAACGCTGGCGCCTGGCGGTGAAGCTCA
AGCGACCTGCCGGCCTGGTCAATCTGCAAGCCTTCGATCACGAGGCCTGGCTGCTGGCCCAGCGCATCGGCGCTACGGGC
ACGGTCAAGGATGGGCAATTGCTGGCCGCCACCCGGGAGAGTTGGCGTGCGCGCATTCGCCAGCGCTTGCTGCAAGTCGA
TGCCCACGGGCGCTCCGGCGGCCTGGCGGCCCTGGTGCTGGGCGACGGTTCGGGCTTGAGCCAGGAAGACTGGCGTGTCT
TGCAAGACACCGGGACCGTGCACCTGATGGTGATTTCCGGGCAGCACATCAGCTTGCTGGCCGCAGTGATGTACGCCCTG
GTGGCGGGGCTGGCCCGCTACGGCCTGTGGCCCGGGCGCTGGCCCTGGCTGCCCTGGGCCTGCGGGCTGGCATTCGCCTC
GGCCCTGGGGTACGGGTTGCTGGCGGGGTTCGATGTGCCGGTGCGCCGTGCCTGCGTGATGGTGGCCCTGGTGCTGATCT
GGCGCCTGCGCTTTCGCCACCTGGGCGCCTGGTGGCCGTTCCTGCTGGCATTGAATGCGGTGTTGTTGTTCGAGCCGCTG
GCCAGTCTGCAGCCAGGGTTCTGGCTGTCCTTTACCGCGGTGGCGGTGTTGATCCTGGTCTTCGGCGGGCGCCTGGGAGG
CTGGCGCTGGTGGCAGTCCTGGACCCGTATTCAATGGTTGATCGCCATCGGCCTGTGCCCGGTGCTGCTGGCGCTGGGGT
TGCCCATCAGTCTCAGCGGGCCGCTGGCCAATCTGCTGGCGGAACCCTGGATCAGCCTGCTGGTGCTGCCGCCGGCGTTG
CTCGGCACCTTGTTGCTGGCGGTGCCTTACCTGGGCGAAGGCTTGCTCTGGCTGGCCGGTGGCTTGCTGGACCTGCTGTT
CCGCGGCCTGACCCTGCTGGCTGCCCAGTGGCCGGCGTGGATAGCGCCGGCCATACCGCTCTGGGCCTGGAGCATCAGCG
CGCTGGGAGCCTTGCTGCTGTTGCTGCCTGCGGGCGTGCCGCTGCGTCCCTTGGGCTGGCCGATGCTGTTGTTGGTGGTG
TTCCCGCCGAAAAACACGCTGCCATATGGCGAGGCGGAAGTCTGGCAACTGGATGTCGGGCAGGGCCTGGCGGTGCTGGT
ACGGACTCGCGAGCACGCGATGCTGTATGACGCCGGTCCGCGTTTTGGCGATTCCGACCTGGGCGCGCGGGTAGTGCTGC
CGTCCTTGCGCAAGCTGGGTGTCGCGCGCCTCGACCTGATGCTGCTCAGCCACGCCGATGCCGATCATGCCGGTGGCGCC
GACGCCATCCAGCGCGGCTTGCCTGTGGCCAGGCTGGTCAGCGGCGATCCCGAGGGTTTGCCGGCCTATTTACCGGCAGA
GCCTTGCGCCAGCGGTGAGCAGTGGCAATGGGACGGGGTGCGTTTTTCCCTGTGGCAATGGGCAGGTGCGCAGAACGGTA
ACCAGAAGTCCTGCGTGATGCAGGTCGAGGCCCAGGGCGAGCGTTTGCTGCTGACGGGGGATATCGATGCCCTGGCCGAG
CGCGCCTTGCTGGATACCCCGCTGGCCGTCGAGACCCACTGGTTGCAGGCGCCGCACCATGGCAGCCGCAGTTCGTCGTC
CGAGGCCCTGCTCAAGGCCCTTGCGCCTTCGGCGGTGCTGATTTCCCGTGGGCACGGCAATGGGTTTGGGCATCCGCACC
CGCAGGTCGTCGAACGTTATCGCCAGCAAGGGACCGCCATTTACGACAGTGCGGAGCAGGGAGCGCTGCGGCTGATGCTG
GGCACTTACACCGAACCGACGAGCCTGCGGGCGCAGCGGCGCTTTTGGCGCAAATGGCCACTATCTCCTTAA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-463)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

• Domain of unknown function (DUF4131) (DUF4131) (23-167)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.256	96.77	0.622