Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PUP50_RS10595 Genome accession   NZ_CP118153
Coordinates   2331605..2332240 (+) Length   211 a.a.
NCBI ID   WP_007931657.1    Uniprot ID   A0AAX2DUM3
Organism   Pseudomonas chlororaphis strain ATCC 17811     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2326605..2337240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUP50_RS10575 (PUP50_10575) - 2326850..2327782 (+) 933 WP_007931649.1 ABC transporter ATP-binding protein -
  PUP50_RS10580 (PUP50_10580) - 2327779..2328558 (+) 780 WP_007931651.1 ABC transporter permease -
  PUP50_RS10585 (PUP50_10585) - 2328607..2329122 (-) 516 WP_053260192.1 DUF2062 domain-containing protein -
  PUP50_RS10590 (PUP50_10590) comA 2329271..2331502 (+) 2232 WP_274305984.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PUP50_RS10595 (PUP50_10595) exbB 2331605..2332240 (+) 636 WP_007931657.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PUP50_RS10600 (PUP50_10600) - 2332237..2332665 (+) 429 WP_274305985.1 ExbD/TolR family protein -
  PUP50_RS10605 (PUP50_10605) lpxK 2332665..2333675 (+) 1011 WP_274305986.1 tetraacyldisaccharide 4'-kinase -
  PUP50_RS10610 (PUP50_10610) - 2333698..2333883 (+) 186 WP_007931663.1 Trm112 family protein -
  PUP50_RS10615 (PUP50_10615) kdsB 2333880..2334644 (+) 765 WP_274305987.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PUP50_RS10620 (PUP50_10620) - 2334644..2335108 (+) 465 WP_274305988.1 low molecular weight protein-tyrosine-phosphatase -
  PUP50_RS10625 (PUP50_10625) murB 2335105..2336124 (+) 1020 WP_274305989.1 UDP-N-acetylmuramate dehydrogenase -
  PUP50_RS10630 (PUP50_10630) - 2336373..2336843 (+) 471 WP_274305990.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22947.12 Da        Isoelectric Point: 8.1069

>NTDB_id=790753 PUP50_RS10595 WP_007931657.1 2331605..2332240(+) (exbB) [Pseudomonas chlororaphis strain ATCC 17811]
MWELVKSGGWMMLPIILSSIVAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKDKLKELRAHSPLGEILAAGLAN
SKHGREVMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTSNAAVLAGGISKALITTA
SGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=790753 PUP50_RS10595 WP_007931657.1 2331605..2332240(+) (exbB) [Pseudomonas chlororaphis strain ATCC 17811]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATTGTCGCGGTCGGCATCATTGC
CGAGCGTCTGTGGACCCTGCGGGCCAGCCGCGTCACCCCGCCTCATCTGCTGGGCCAGGTGTGGCGCTGGATCAAGGACA
AACAGCTGAACAAGGACAAGCTCAAGGAACTGCGCGCCCATTCGCCCCTGGGCGAGATCCTGGCCGCCGGCCTGGCCAAC
TCCAAGCATGGCCGCGAGGTCATGAAAGAGTGCATCGAGGAAGCCGCCGCCCGGGTCATCCACGAACTGGAGCGCTACCT
CAATGCCCTCGGCACCATCGCCGCCATGGCCCCGCTGCTGGGCTTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGCTCGGGGATGACCAGCAACGCCGCGGTGCTGGCGGGTGGTATTTCCAAGGCGCTGATCACCACCGCG
TCCGGCCTGATGGTCGGTATCCCGGCAGTGTTCTTCCACCGTTTCCTGCAACGCCGGGTCGATGAGCTGGTGGTTGGCAT
GGAGCAGGAAGCCATCAAACTGGTCGAAGTGGTGCAGGGCGACCGCGACGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.73

100

0.867