Detailed information NTG0790736

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: PUP64_RS18240
• Genome accession: NZ_CP118152
• Coordinates: 3973843..3975171 (-)
• Length: 442 a.a.
• NCBI ID: WP_081359715.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis strain ATCC 336631
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3968843..3980171

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PUP64_RS18225 (PUP64_18225)	-	3969205..3972276 (+)	3072	WP_081359713.1	pilus assembly protein	-
PUP64_RS18230 (PUP64_18230)	-	3972290..3972691 (+)	402	WP_038575642.1	type IV pilin protein	-
PUP64_RS18235 (PUP64_18235)	thiO	3972746..3973846 (+)	1101	WP_081359714.1	glycine oxidase ThiO	-
PUP64_RS18240 (PUP64_18240)	pilR	3973843..3975171 (-)	1329	WP_081359715.1	sigma-54-dependent transcriptional regulator	Regulator
PUP64_RS18245 (PUP64_18245)	-	3975443..3975676 (-)	234	WP_007924721.1	PP0621 family protein	-
PUP64_RS18250 (PUP64_18250)	-	3975811..3976833 (-)	1023	WP_009050934.1	outer membrane protein assembly factor BamD	-
PUP64_RS18255 (PUP64_18255)	rluD	3976986..3977948 (+)	963	WP_081359716.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
PUP64_RS18260 (PUP64_18260)	pgeF	3977945..3978670 (+)	726	WP_081359717.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48752.17 Da
• Isoelectric Point: 7.9404

>NTDB_id=790736 PUP64_RS18240 WP_081359715.1 3973843..3975171(-) (pilR) [Pseudomonas chlororaphis strain ATCC 336631]
MSPRQKVLIVDDDPGIREYLEISLGRMQRHTRSARTLGEARHWLAREGFDLCLSDLHLPDGTGLELLEHIQHHRLRMPLA
ILSTCPHQETAVQALKAGAIDFLSKPVALARLRELLNGPLPGSTPANPATGPLLGDSTAMHKLRMQIDKLAQSQASIYIS
GESGSGKELVARAIHDQGPRAGRAFVPINCGAIPPELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDVRILCATHKALQAEVCAGRFRQDLYYRLNVIELAVPPLRARKADIEPLATAILE
RLAQGNGQQLARLQPGALLALQGYDFPGNVRELENLLERAHTLCENQQIEARDLCLTPNSAHPAIAPGPTQVIDLEGYLQ
EVERRLILQALEHTRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=790736 PUP64_RS18240 WP_081359715.1 3973843..3975171(-) (pilR) [Pseudomonas chlororaphis strain ATCC 336631]
ATGAGCCCACGGCAAAAAGTCCTGATCGTCGATGACGATCCAGGCATTCGCGAATATCTGGAAATCAGCCTCGGCCGGAT
GCAGCGCCATACCCGCAGCGCCCGCACCCTGGGCGAAGCGCGTCACTGGCTGGCCCGGGAAGGTTTCGACCTGTGCCTGA
GCGACCTGCATCTGCCCGACGGTACGGGTCTGGAATTACTCGAGCATATCCAGCACCACCGGCTGCGAATGCCGCTGGCC
ATACTCAGCACCTGCCCCCACCAGGAAACCGCGGTCCAGGCCCTGAAGGCCGGCGCCATCGACTTCCTGAGCAAACCCGT
GGCCCTGGCGCGCCTGCGCGAGCTGCTGAACGGCCCCCTGCCCGGATCGACACCAGCGAACCCAGCTACCGGCCCACTGC
TCGGCGATTCGACCGCCATGCACAAACTGCGCATGCAGATCGACAAACTGGCCCAGAGTCAGGCCTCGATCTATATCAGC
GGAGAGTCCGGCAGCGGCAAGGAACTGGTCGCCCGTGCGATCCACGACCAAGGACCACGGGCCGGGCGGGCCTTCGTGCC
AATCAACTGCGGGGCCATTCCGCCGGAACTGATGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGCGCCA
TCGAAGACAAACCCGGCCTGTTCCAGGCAGCGCACGGCGGCACCCTGTTTCTCGATGAGGTGGCCGATCTACCGCTGGCG
ATGCAGGTCAAATTGCTCCGTGCGCTCCAGGAGAAGGCGGTGCGCTGTGTCGGCGGGCAGCAGGAGGTCCAGGTCGATGT
GCGCATTCTCTGCGCCACCCACAAGGCACTGCAGGCGGAAGTGTGTGCCGGGCGTTTTCGTCAGGACCTCTACTACCGCC
TCAACGTGATCGAGCTGGCGGTGCCACCACTAAGGGCGCGCAAGGCTGATATCGAACCCTTGGCCACAGCCATACTCGAG
CGCCTGGCGCAGGGCAACGGCCAACAGTTGGCGCGGCTCCAGCCAGGCGCGCTGCTGGCACTCCAGGGCTACGACTTTCC
CGGCAACGTGCGCGAACTGGAGAACCTGCTCGAACGGGCGCACACCCTGTGCGAGAACCAGCAGATCGAAGCACGCGATC
TATGCCTGACGCCCAATAGCGCCCACCCGGCCATCGCGCCCGGCCCGACACAGGTGATCGACCTTGAAGGTTATCTGCAG
GAAGTCGAGCGCCGGCTGATCCTCCAGGCCCTGGAGCACACCCGCTGGAACCGCACGGCGGCGGCCCAGCGCTTGAGCCT
GTCGTTTCGTTCGATGCGCTACAGGCTGAAGAAACTCGGCCTGGATTAA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (134-299)

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

• Response regulator receiver domain (Response_reg) (7-116)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	66.444	100	0.676
pilR	Acinetobacter baumannii strain A118	44.009	100	0.457