Detailed information NTG0790720

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: PUP64_RS04955
• Genome accession: NZ_CP118152
• Coordinates: 1063958..1066189 (-)
• Length: 743 a.a.
• NCBI ID: WP_081362294.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis strain ATCC 336631
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1058958..1071189

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PUP64_RS04920 (PUP64_04920)	murB	1059335..1060354 (-)	1020	WP_081362291.1	UDP-N-acetylmuramate dehydrogenase	-
PUP64_RS04925 (PUP64_04925)	-	1060351..1060815 (-)	465	WP_081362292.1	low molecular weight protein-tyrosine-phosphatase	-
PUP64_RS04930 (PUP64_04930)	kdsB	1060815..1061579 (-)	765	WP_016702178.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
PUP64_RS04935 (PUP64_04935)	-	1061576..1061761 (-)	186	WP_007931663.1	Trm112 family protein	-
PUP64_RS04940 (PUP64_04940)	lpxK	1061785..1062795 (-)	1011	WP_081362293.1	tetraacyldisaccharide 4'-kinase	-
PUP64_RS04945 (PUP64_04945)	-	1062795..1063223 (-)	429	WP_009047818.1	ExbD/TolR family protein	-
PUP64_RS04950 (PUP64_04950)	exbB	1063220..1063855 (-)	636	WP_007931657.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
PUP64_RS04955 (PUP64_04955)	comA	1063958..1066189 (-)	2232	WP_081362294.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
PUP64_RS04960 (PUP64_04960)	-	1066338..1066853 (+)	516	WP_038580916.1	DUF2062 domain-containing protein	-
PUP64_RS04965 (PUP64_04965)	-	1066902..1067681 (-)	780	WP_007931651.1	ABC transporter permease	-
PUP64_RS04970 (PUP64_04970)	-	1067678..1068610 (-)	933	WP_081362295.1	ABC transporter ATP-binding protein	-
PUP64_RS04975 (PUP64_04975)	-	1068743..1069366 (-)	624	WP_081362296.1	glutathione S-transferase family protein	-
PUP64_RS04980 (PUP64_04980)	-	1069409..1070068 (-)	660	WP_038580923.1	transglutaminase-like domain-containing protein	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 81232.38 Da
• Isoelectric Point: 9.9468

>NTDB_id=790720 PUP64_RS04955 WP_081362294.1 1063958..1066189(-) (comA) [Pseudomonas chlororaphis strain ATCC 336631]
MRTGMLALAAGLLSLRFLPALPAIGWLAVLPVVALMLLPFRTYALALFLLGLAWACVSAQWALDDRLPEPLDGQTRWLEG
RVVGLPQQAEGVLRFELEGGRARRGRIPQRLRLAWYGGPPLHSGERWRLAVKLKRPAGLVNLQAFDHEAWLLAQRIGATG
TVKDGQLLVAAEGGWRARIRQRLLQVDAHGRAGGLAALVLGDGSGLSREDWRVLQDTGTVHLMVISGQHISLLAAVMYVL
VAGLARYGLWPGRWPWLPWACGLAFASALGYGGLAGFDVPVRRACVMVALVLIWRLRFRHLGAWWPFLLALNTVLLFEPL
ASLQPGFWLSFTAVAVLILIFGGRLGGWRWWQSWTRIQWLIAIGLCPVLLALGLPISLSGPLANLLAEPWISLLVLPPAL
LGTLLLVVPYLGEGLLWLAGGLLDLLFRGLTLLAAQWPAWVAPAIPLWAWSISALGAFLLLLPAGVPLRPLGWPMLLLMV
FPPKNTLPYGEAEVWQLDVGQGLAVLVRTREHAMLYDAGPRLGDSDLGARVVLPSLRKLGVERLDLMLLSHADADHAGGA
DAVQRGLPVARLVSGDPEGLPAYLPAEPCVSGEQWQWDGVRFSLWQWTDAQNGNQKSCVMQVEAKGERLLLTGDIDALAE
RALLDTPLAVETHWLQAPHHGSRSSSSPALLKALAPSAVLISRGHGNGFGHPHPQVVERYRQQGTAIYDSAEQGALRLML
GTYTEPTSLRAQRRFWRKWPLSP

Nucleotide

• Length: 2232 bp

>NTDB_id=790720 PUP64_RS04955 WP_081362294.1 1063958..1066189(-) (comA) [Pseudomonas chlororaphis strain ATCC 336631]
ATGCGCACAGGGATGCTGGCGTTGGCGGCGGGGCTTTTGAGCCTGCGCTTTTTGCCGGCGCTGCCAGCGATCGGATGGCT
GGCCGTGTTGCCGGTGGTGGCCTTGATGCTGCTGCCGTTTCGCACCTATGCATTGGCACTTTTTCTGTTGGGCCTGGCGT
GGGCTTGCGTGAGTGCGCAATGGGCGCTGGACGATCGTTTGCCGGAACCGCTCGATGGACAGACCCGCTGGCTTGAGGGC
CGGGTAGTGGGATTGCCGCAGCAGGCCGAGGGCGTGCTGCGTTTCGAGCTGGAAGGCGGGCGGGCTCGGCGCGGACGGAT
TCCCCAGCGCCTGCGCCTGGCCTGGTATGGCGGGCCGCCGCTGCACAGCGGCGAACGCTGGCGCCTGGCGGTAAAACTCA
AGCGTCCCGCTGGGCTGGTCAATCTGCAGGCCTTCGATCACGAGGCCTGGCTGCTGGCCCAGCGTATTGGCGCCACGGGC
ACGGTCAAGGATGGACAACTGCTGGTTGCCGCTGAGGGTGGCTGGCGTGCGCGCATTCGCCAGCGCTTGCTGCAGGTCGA
TGCCCATGGGCGCGCCGGTGGCCTGGCGGCCCTGGTGCTGGGTGACGGCTCGGGGCTGAGCCGGGAAGACTGGCGTGTCC
TGCAAGACACCGGGACCGTGCACCTGATGGTGATTTCCGGGCAGCACATCAGTTTGCTGGCCGCGGTGATGTACGTCCTG
GTGGCAGGGCTGGCCCGCTACGGCCTGTGGCCCGGACGTTGGCCCTGGCTGCCCTGGGCCTGTGGGCTGGCATTCGCTTC
GGCCCTGGGTTACGGGGGGCTGGCGGGCTTCGACGTGCCGGTGCGTCGCGCCTGTGTGATGGTTGCCCTGGTGCTGATCT
GGCGCCTGCGCTTTCGTCACCTGGGCGCCTGGTGGCCATTTCTGCTGGCGTTGAATACGGTGCTGTTGTTCGAGCCGCTG
GCCAGTCTGCAGCCAGGGTTCTGGCTATCCTTTACCGCGGTGGCGGTGCTGATCCTGATCTTCGGCGGGCGTCTGGGAGG
CTGGCGCTGGTGGCAATCCTGGACCCGTATCCAATGGTTGATCGCCATCGGCCTGTGCCCGGTGCTGCTGGCGCTGGGGT
TGCCCATCAGCCTCAGCGGGCCGCTGGCCAATCTGCTGGCGGAACCCTGGATCAGCCTGTTGGTGCTGCCGCCGGCGTTG
CTCGGCACCTTGTTGCTGGTGGTGCCTTATCTGGGCGAAGGCCTGCTCTGGCTGGCCGGCGGTTTGCTGGACTTGCTGTT
CCGCGGTCTGACGCTATTGGCTGCCCAATGGCCGGCATGGGTAGCGCCGGCCATACCGCTCTGGGCCTGGAGCATCAGTG
CGCTGGGAGCCTTTCTGCTGTTGCTGCCCGCTGGCGTGCCGCTGCGTCCCTTGGGATGGCCGATGCTGCTGTTGATGGTG
TTTCCGCCGAAAAACACTCTGCCATACGGCGAGGCGGAAGTTTGGCAACTGGATGTCGGGCAAGGGCTGGCGGTACTGGT
GCGGACTCGCGAGCACGCAATGCTGTACGACGCCGGGCCGCGTTTGGGCGACTCCGACCTGGGCGCCCGGGTGGTGCTGC
CATCCTTGCGCAAGCTGGGCGTCGAGCGCCTCGACCTGATGCTGCTCAGCCACGCCGATGCCGATCATGCCGGTGGCGCC
GACGCTGTCCAGCGCGGCTTACCGGTGGCCAGGCTGGTCAGCGGCGATCCCGAGGGCTTGCCGGCCTATTTGCCGGCAGA
GCCTTGCGTCAGCGGCGAGCAATGGCAATGGGACGGAGTACGGTTTTCTTTGTGGCAATGGACGGATGCGCAGAACGGCA
ACCAGAAGTCCTGCGTGATGCAGGTCGAGGCCAAGGGCGAGCGTTTGCTGCTGACGGGGGATATCGATGCCCTGGCGGAA
CGCGCGTTGCTGGATACCCCGCTGGCCGTCGAGACCCATTGGTTGCAGGCGCCACACCACGGCAGCCGCAGCTCGTCGTC
CCCGGCCTTGCTCAAGGCCCTGGCGCCTTCGGCAGTGCTGATTTCCCGAGGGCACGGCAATGGCTTCGGGCATCCGCACC
CGCAGGTCGTCGAACGTTATCGCCAGCAAGGGACCGCCATTTACGACAGCGCGGAGCAAGGAGCGCTACGGTTGATGCTG
GGCACCTACACCGAACCGACGAGCCTGCGGGCGCAGCGGCGCTTTTGGCGCAAATGGCCACTATCTCCTTAA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-463)

• Domain of unknown function (DUF4131) (DUF4131) (22-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.256	96.77	0.622