Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PUP64_RS04950 Genome accession   NZ_CP118152
Coordinates   1063220..1063855 (-) Length   211 a.a.
NCBI ID   WP_007931657.1    Uniprot ID   A0AAX2DUM3
Organism   Pseudomonas chlororaphis strain ATCC 336631     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1058220..1068855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUP64_RS04915 (PUP64_04915) - 1058616..1059086 (-) 471 WP_081362290.1 (2Fe-2S)-binding protein -
  PUP64_RS04920 (PUP64_04920) murB 1059335..1060354 (-) 1020 WP_081362291.1 UDP-N-acetylmuramate dehydrogenase -
  PUP64_RS04925 (PUP64_04925) - 1060351..1060815 (-) 465 WP_081362292.1 low molecular weight protein-tyrosine-phosphatase -
  PUP64_RS04930 (PUP64_04930) kdsB 1060815..1061579 (-) 765 WP_016702178.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PUP64_RS04935 (PUP64_04935) - 1061576..1061761 (-) 186 WP_007931663.1 Trm112 family protein -
  PUP64_RS04940 (PUP64_04940) lpxK 1061785..1062795 (-) 1011 WP_081362293.1 tetraacyldisaccharide 4'-kinase -
  PUP64_RS04945 (PUP64_04945) - 1062795..1063223 (-) 429 WP_009047818.1 ExbD/TolR family protein -
  PUP64_RS04950 (PUP64_04950) exbB 1063220..1063855 (-) 636 WP_007931657.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PUP64_RS04955 (PUP64_04955) comA 1063958..1066189 (-) 2232 WP_081362294.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PUP64_RS04960 (PUP64_04960) - 1066338..1066853 (+) 516 WP_038580916.1 DUF2062 domain-containing protein -
  PUP64_RS04965 (PUP64_04965) - 1066902..1067681 (-) 780 WP_007931651.1 ABC transporter permease -
  PUP64_RS04970 (PUP64_04970) - 1067678..1068610 (-) 933 WP_081362295.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22947.12 Da        Isoelectric Point: 8.1069

>NTDB_id=790719 PUP64_RS04950 WP_007931657.1 1063220..1063855(-) (exbB) [Pseudomonas chlororaphis strain ATCC 336631]
MWELVKSGGWMMLPIILSSIVAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKDKLKELRAHSPLGEILAAGLAN
SKHGREVMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTSNAAVLAGGISKALITTA
SGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=790719 PUP64_RS04950 WP_007931657.1 1063220..1063855(-) (exbB) [Pseudomonas chlororaphis strain ATCC 336631]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATTGTCGCGGTCGGCATCATTGC
CGAGCGTCTGTGGACCCTGCGGGCCAGCCGTGTTACTCCGCCGCATCTGCTGGGGCAGGTGTGGCGCTGGATCAAGGACA
AGCAACTCAATAAGGACAAACTCAAGGAACTGCGCGCCCATTCACCCCTGGGCGAAATCCTGGCCGCCGGCCTGGCCAAC
TCCAAGCATGGCCGCGAGGTCATGAAAGAGTGCATCGAGGAAGCCGCCGCCCGGGTCATTCACGAACTGGAGCGCTACCT
CAATGCCCTCGGCACCATCGCCGCCATGGCGCCGCTGCTGGGCTTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGCTCGGGCATGACCAGCAACGCCGCGGTGCTGGCCGGTGGTATCTCCAAGGCGCTGATTACTACCGCG
TCCGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGTTTCCTGCAACGCCGGGTCGATGAACTGGTCGTTGGCAT
GGAGCAGGAAGCCATCAAGCTGGTCGAGGTGGTGCAGGGCGACCGCGACGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.73

100

0.867