Detailed information NTG0790707

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: PUP54_RS25195
• Genome accession: NZ_CP118151
• Coordinates: 5544557..5545885 (+)
• Length: 442 a.a.
• NCBI ID: WP_053262729.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis strain ATCC 9446
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5539557..5550885

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PUP54_RS25175 (PUP54_25175)	pgeF	5541048..5541773 (-)	726	WP_053262726.1	peptidoglycan editing factor PgeF	-
PUP54_RS25180 (PUP54_25180)	rluD	5541770..5542732 (-)	963	WP_007924719.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
PUP54_RS25185 (PUP54_25185)	-	5542885..5543907 (+)	1023	WP_053262727.1	outer membrane protein assembly factor BamD	-
PUP54_RS25190 (PUP54_25190)	-	5544042..5544275 (+)	234	WP_053262728.1	PP0621 family protein	-
PUP54_RS25195 (PUP54_25195)	pilR	5544557..5545885 (+)	1329	WP_053262729.1	sigma-54 dependent transcriptional regulator	Regulator
PUP54_RS25200 (PUP54_25200)	thiO	5545882..5546982 (-)	1101	WP_053262730.1	glycine oxidase ThiO	-
PUP54_RS25205 (PUP54_25205)	-	5547037..5547438 (-)	402	WP_007924724.1	type IV pilin protein	-
PUP54_RS25210 (PUP54_25210)	-	5547452..5550520 (-)	3069	WP_053262731.1	pilus assembly protein	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48772.32 Da
• Isoelectric Point: 9.4419

>NTDB_id=790707 PUP54_RS25195 WP_053262729.1 5544557..5545885(+) (pilR) [Pseudomonas chlororaphis strain ATCC 9446]
MSPRQKVLIVDDDPGIREYLEISLGRMQRHTRSARTLGEARHWLAREGFDLCLSDLHLPDGTGLELLEHIQCRQLRMPLA
ILSTCARQETAIHALKAGAIDFLSKPVALARLRELLNGALPGSTPPPPASGPLLGDSAAMHKLRGQIGKLARSQASVYIS
GESGSGKELVARAIHDQGPRASHAFVPVNCGAIPPELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDVRILCATHKALQAEVHAGRFRQDLYYRLNVIELPVPPLRARKADIEPLATAILE
RLAQGNGQQLARLQPSALLALQGYDFPGNVRELENLLERAHTLCENRRIEARDLRLTPNGAHPAITPGLAQVINLEKHLQ
EVERRLILQALEHTRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=790707 PUP54_RS25195 WP_053262729.1 5544557..5545885(+) (pilR) [Pseudomonas chlororaphis strain ATCC 9446]
ATGAGCCCACGACAAAAAGTCTTGATCGTCGATGACGATCCAGGCATTCGCGAATATCTGGAAATCAGCCTCGGCCGGAT
GCAACGCCATACCCGCAGCGCCCGCACCCTGGGCGAAGCGCGTCACTGGCTGGCCCGGGAAGGCTTCGACCTGTGCCTGA
GCGACCTGCATTTACCCGACGGCACGGGGCTGGAATTACTCGAGCATATCCAGTGCCGCCAGCTGCGAATGCCGCTGGCA
ATACTCAGCACCTGCGCCCGCCAGGAAACCGCGATCCACGCCCTGAAGGCCGGCGCCATCGACTTCCTGAGCAAACCCGT
GGCCCTGGCGCGCTTGCGCGAACTGCTGAATGGTGCCCTGCCCGGATCGACACCCCCGCCCCCTGCTAGCGGTCCATTGC
TCGGCGATTCAGCCGCCATGCACAAGCTGCGCGGACAAATCGGCAAACTGGCCCGGAGCCAGGCCTCGGTCTATATCAGC
GGAGAGTCCGGAAGCGGCAAGGAACTGGTCGCCCGCGCGATCCACGACCAGGGTCCTCGAGCCAGCCACGCCTTCGTGCC
GGTCAATTGCGGAGCCATCCCACCGGAACTGATGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGCGCTA
TCGAAGACAAGCCCGGCCTGTTCCAGGCGGCGCACGGCGGCACGCTGTTTCTCGATGAGGTGGCCGATCTGCCGCTGGCG
ATGCAAGTCAAATTGCTCCGCGCGCTGCAGGAGAAGGCGGTGCGGTGCGTCGGTGGGCAGCAGGAGGTCCAGGTCGATGT
GCGCATTCTCTGCGCCACTCACAAGGCGCTGCAGGCGGAAGTGCATGCCGGACGCTTTCGCCAGGATCTCTACTATCGCC
TGAACGTGATCGAGCTGCCGGTACCACCGCTACGGGCGCGCAAGGCTGATATCGAACCCTTGGCCACCGCCATCCTCGAG
CGCCTGGCGCAGGGTAACGGCCAACAACTGGCACGGCTTCAGCCAAGCGCGCTGCTGGCGCTCCAGGGCTACGACTTTCC
CGGTAACGTGCGCGAACTGGAGAACCTGCTCGAACGGGCGCACACCCTGTGCGAGAACCGGCGGATCGAAGCACGCGACC
TGCGCCTGACGCCCAACGGCGCCCACCCGGCCATCACGCCCGGCCTGGCACAGGTGATCAACCTTGAGAAACATCTGCAA
GAAGTCGAGCGCCGACTGATCCTCCAGGCCCTGGAGCACACCCGCTGGAACCGCACGGCGGCGGCCCAGCGCTTGAGCCT
GTCGTTTCGCTCGATGCGCTACCGGCTGAAGAAGCTCGGCCTGGATTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

• Response regulator receiver domain (Response_reg) (7-116)

• Sigma-54 interaction domain (Sigma54_activat) (134-299)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	68.172	100	0.683
pilR	Acinetobacter baumannii strain A118	44.009	100	0.457