Detailed information NTG0790685

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: PUP49_RS28525
• Genome accession: NZ_CP118150
• Coordinates: 6325185..6326513 (+)
• Length: 442 a.a.
• NCBI ID: WP_053280980.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis strain DSM 21509
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 6320185..6331513

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PUP49_RS28505 (PUP49_28505)	pgeF	6321684..6322409 (-)	726	WP_053280978.1	peptidoglycan editing factor PgeF	-
PUP49_RS28510 (PUP49_28510)	rluD	6322406..6323368 (-)	963	WP_053280979.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
PUP49_RS28515 (PUP49_28515)	-	6323521..6324543 (+)	1023	WP_009050934.1	outer membrane protein assembly factor BamD	-
PUP49_RS28520 (PUP49_28520)	-	6324678..6324911 (+)	234	WP_038575645.1	PP0621 family protein	-
PUP49_RS28525 (PUP49_28525)	pilR	6325185..6326513 (+)	1329	WP_053280980.1	sigma-54-dependent transcriptional regulator	Regulator
PUP49_RS28530 (PUP49_28530)	thiO	6326510..6327610 (-)	1101	WP_053280981.1	glycine oxidase ThiO	-
PUP49_RS28535 (PUP49_28535)	-	6327665..6328066 (-)	402	WP_025807536.1	type IV pilin protein	-
PUP49_RS28540 (PUP49_28540)	-	6328080..6331151 (-)	3072	WP_053280982.1	pilus assembly protein	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48894.33 Da
• Isoelectric Point: 9.1960

>NTDB_id=790685 PUP49_RS28525 WP_053280980.1 6325185..6326513(+) (pilR) [Pseudomonas chlororaphis strain DSM 21509]
MSPRQKVLIVDNDPGIREYLEISLGRMQRHTRSARTLGEARRWLAREGFDLCLSDLHLPDGTGLELLEHIQHRRLRMPLA
ILSTCARQEAAAQALKAGAIDFLSKPVALARLRELLNSALLGSTPAPPATGPLLGDSAAMHKLRGQIDKLAQSQASVYIS
GESGSGKELVARAIHDQGSRASRAFVPINCGAIPPELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDARILCATHKALQAEVRAGRFRQDLYYRLNVIELPVPPLRARKDDIEPLAITILE
RLAQGDGQQLARLQPSALLALQGYDFPGNVRELENLLERAHTLCESRQIEARDLRLTPNGAHPAIAPDPAQVIDLEKHLQ
EVERRLILQALEHTRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=790685 PUP49_RS28525 WP_053280980.1 6325185..6326513(+) (pilR) [Pseudomonas chlororaphis strain DSM 21509]
ATGAGCCCACGGCAAAAAGTCCTGATCGTCGATAACGATCCAGGCATTCGCGAATATCTGGAAATCAGCCTCGGCCGGAT
GCAACGCCATACCCGCAGCGCCCGCACCTTGGGCGAAGCGCGTCGCTGGCTGGCCCGGGAGGGTTTCGACCTGTGCCTGA
GCGACCTGCATCTGCCCGACGGCACAGGGCTGGAATTACTCGAGCATATCCAGCACCGTCGGCTGCGAATGCCGCTGGCA
ATACTCAGCACCTGCGCCCGCCAGGAAGCCGCGGCCCAGGCCCTGAAGGCCGGTGCTATCGACTTTCTGAGCAAACCCGT
GGCCCTGGCCCGCTTGCGCGAACTGCTGAACAGCGCCCTGCTCGGATCGACGCCAGCGCCCCCTGCTACCGGCCCCTTGC
TCGGCGATTCGGCCGCCATGCACAAACTGCGCGGACAGATCGACAAACTGGCCCAGAGTCAGGCCTCGGTCTATATCAGC
GGTGAGTCCGGCAGCGGCAAGGAATTGGTCGCCCGTGCCATCCACGACCAGGGATCACGGGCCAGCCGCGCCTTCGTGCC
GATCAACTGCGGAGCTATTCCGCCGGAACTGATGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGTGCCA
TCGAAGACAAGCCCGGTTTGTTCCAGGCAGCGCACGGCGGCACCCTGTTTCTCGATGAGGTGGCCGATCTGCCGCTGGCG
ATGCAGGTCAAATTGCTCCGTGCGCTCCAGGAGAAGGCCGTGCGCTGTGTCGGTGGGCAGCAGGAGGTCCAGGTCGATGC
GCGCATTCTCTGCGCCACCCACAAGGCGCTGCAGGCGGAAGTGCGTGCCGGGCGTTTTCGTCAGGACCTCTACTACCGCC
TGAACGTGATCGAGCTGCCGGTGCCACCGCTACGGGCACGCAAGGACGATATCGAACCCTTGGCCATAACCATCCTCGAG
CGCCTGGCGCAGGGCGACGGCCAACAGCTGGCACGGCTTCAGCCAAGCGCACTGTTGGCGCTCCAGGGTTACGACTTTCC
CGGCAATGTGCGCGAACTGGAGAACCTGCTCGAACGGGCGCACACCCTGTGCGAGAGCCGGCAAATCGAAGCACGCGATC
TGCGCCTGACGCCAAACGGCGCCCACCCGGCCATCGCGCCCGACCCGGCACAGGTGATCGACCTTGAGAAACATCTGCAA
GAAGTCGAGCGCCGGCTGATCCTCCAGGCCCTGGAGCACACCCGCTGGAACCGCACCGCGGCGGCCCAGCGTTTGAGCCT
GTCGTTTCGTTCGATGCGCTACAGGCTGAAGAAACTCGGCCTGGATTAG

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

• Sigma-54 interaction domain (Sigma54_activat) (134-299)

• Response regulator receiver domain (Response_reg) (7-116)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	66.817	100	0.67
pilR	Acinetobacter baumannii strain A118	43.791	100	0.455