Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PUP49_RS10020 Genome accession   NZ_CP118150
Coordinates   2212880..2213515 (+) Length   211 a.a.
NCBI ID   WP_025804353.1    Uniprot ID   A0AAQ1FKP2
Organism   Pseudomonas chlororaphis strain DSM 21509     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2207880..2218515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUP49_RS10000 (PUP49_10000) - 2208126..2209058 (+) 933 WP_053278047.1 ABC transporter ATP-binding protein -
  PUP49_RS10005 (PUP49_10005) - 2209055..2209834 (+) 780 WP_053278048.1 ABC transporter permease -
  PUP49_RS10010 (PUP49_10010) - 2209883..2210398 (-) 516 WP_053278049.1 DUF2062 domain-containing protein -
  PUP49_RS10015 (PUP49_10015) comA 2210546..2212777 (+) 2232 WP_053278050.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PUP49_RS10020 (PUP49_10020) exbB 2212880..2213515 (+) 636 WP_025804353.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PUP49_RS10025 (PUP49_10025) - 2213512..2213940 (+) 429 WP_009047818.1 ExbD/TolR family protein -
  PUP49_RS10030 (PUP49_10030) lpxK 2213940..2214950 (+) 1011 WP_053278051.1 tetraacyldisaccharide 4'-kinase -
  PUP49_RS10035 (PUP49_10035) - 2214974..2215159 (+) 186 WP_007931663.1 Trm112 family protein -
  PUP49_RS10040 (PUP49_10040) kdsB 2215156..2215920 (+) 765 WP_053278052.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PUP49_RS10045 (PUP49_10045) - 2215920..2216384 (+) 465 WP_053278053.1 low molecular weight protein-tyrosine-phosphatase -
  PUP49_RS10050 (PUP49_10050) murB 2216381..2217400 (+) 1020 WP_053278054.1 UDP-N-acetylmuramate dehydrogenase -
  PUP49_RS10055 (PUP49_10055) - 2217654..2218124 (+) 471 WP_016702177.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22918.08 Da        Isoelectric Point: 7.4247

>NTDB_id=790675 PUP49_RS10020 WP_025804353.1 2212880..2213515(+) (exbB) [Pseudomonas chlororaphis strain DSM 21509]
MWELVISGGWMMLPIILSSIAAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKDKLKELRAHSPLGEILAAGLAN
SKHGREVMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
SGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=790675 PUP49_RS10020 WP_025804353.1 2212880..2213515(+) (exbB) [Pseudomonas chlororaphis strain DSM 21509]
GTGTGGGAATTGGTCATATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATTGCCGCGGTCGGCATCATTGC
CGAGCGCCTGTGGACCCTGCGGGCCAGCCGTGTTACTCCGCCGCATCTGCTGGGGCAGGTCTGGCGCTGGATCAAGGACA
AGCAACTCAATAAGGACAAACTCAAGGAACTGCGCGCCCATTCTCCTCTGGGGGAAATCCTCGCGGCCGGCCTGGCCAAC
TCCAAGCATGGCCGCGAGGTCATGAAGGAGTGCATCGAGGAAGCCGCCGCCCGGGTCATTCATGAACTGGAGCGCTACCT
CAATGCCCTCGGCACCATCGCCGCCATGGCGCCGCTGCTGGGCTTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGGTCGGGCATGACCACCAACGCCGCGGTGCTGGCCGGTGGTATCTCCAAGGCGCTGATTACCACCGCG
TCCGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGTTTCCTGCAACGCCGGGTCGATGAACTGGTGGTGGGTAT
GGAGCAGGAAGCCATCAAACTGGTCGAAGTGGTGCAAGGCGACCGCGACGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.73

100

0.867