Detailed information NTG0790674

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: PUP49_RS10015
• Genome accession: NZ_CP118150
• Coordinates: 2210546..2212777 (+)
• Length: 743 a.a.
• NCBI ID: WP_053278050.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis strain DSM 21509
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2205546..2217777

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PUP49_RS09990 (PUP49_09990)	-	2206668..2207327 (+)	660	WP_053278045.1	transglutaminase-like domain-containing protein	-
PUP49_RS09995 (PUP49_09995)	-	2207370..2207993 (+)	624	WP_053278046.1	glutathione S-transferase family protein	-
PUP49_RS10000 (PUP49_10000)	-	2208126..2209058 (+)	933	WP_053278047.1	ABC transporter ATP-binding protein	-
PUP49_RS10005 (PUP49_10005)	-	2209055..2209834 (+)	780	WP_053278048.1	ABC transporter permease	-
PUP49_RS10010 (PUP49_10010)	-	2209883..2210398 (-)	516	WP_053278049.1	DUF2062 domain-containing protein	-
PUP49_RS10015 (PUP49_10015)	comA	2210546..2212777 (+)	2232	WP_053278050.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
PUP49_RS10020 (PUP49_10020)	exbB	2212880..2213515 (+)	636	WP_025804353.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
PUP49_RS10025 (PUP49_10025)	-	2213512..2213940 (+)	429	WP_009047818.1	ExbD/TolR family protein	-
PUP49_RS10030 (PUP49_10030)	lpxK	2213940..2214950 (+)	1011	WP_053278051.1	tetraacyldisaccharide 4'-kinase	-
PUP49_RS10035 (PUP49_10035)	-	2214974..2215159 (+)	186	WP_007931663.1	Trm112 family protein	-
PUP49_RS10040 (PUP49_10040)	kdsB	2215156..2215920 (+)	765	WP_053278052.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
PUP49_RS10045 (PUP49_10045)	-	2215920..2216384 (+)	465	WP_053278053.1	low molecular weight protein-tyrosine-phosphatase	-
PUP49_RS10050 (PUP49_10050)	murB	2216381..2217400 (+)	1020	WP_053278054.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 81346.36 Da
• Isoelectric Point: 10.0609

>NTDB_id=790674 PUP49_RS10015 WP_053278050.1 2210546..2212777(+) (comA) [Pseudomonas chlororaphis strain DSM 21509]
MRTGMLALAAGLLSLRFLPALPAIGWLAVLPVVALMLLPFRTYPLAFFLLGLAWACISAQWALDDRLAEPLDGQTRWLEG
RVVGLPQQAEGVVRFELEGGRARRGRIPQRLRLAWYGGPPVHSGERWRLAVKLKRPVGLVNLQAFDHEAWLLAQRIGATG
TVKDGQLLAATQESWRARIRQRLLQVDAHGRAGGLAALVLGDGSGLSREDWRVLQDTGTVHLMVISGQHISLLAAVMYAL
VAGLARYGLWPGRWPWLPWACGLAFASALGYGLLAGFDVPVRRACVMVALVLIWRLRFRHLGAWWPFLLALNAVLLFEPL
ASLQPGFWLSFTAVAVLILIFGGRLGGWRWWQSWTRIQWLIAIGLCPVLLALGLPISLSGPLANLLAEPWISLLVLPPAL
LGTLFLAVPYLGEGLLWLAGGLLDVLFRGLALLAAQWPAWVAPAIPLWAWSISALGAFLLLLPAGVPLRPLGWSMLLLMV
FPPRNTLPYGEAEVWQLDVGQGLAVLVRTREHAMLYDAGPRFGDSDLGARVVLPSLRKLGVEHLDLMLLSHADADHAGGA
DAIQRGLPVARLVSGDPEGLPAYLPAEPCASGEQWQWDGVRFSLWQWAGAQNGNQKSCVMQVEAKGERLLLTGDIDAQAE
RALLNTPLAVETHWLQAPHHGSRSSSSPALLKTLAPSAVLISRGHGNGFGHPHPQVVERYRQQGTVIYDSAEQGALRLML
GTYTEPTSLRAQRRFWRKWPLSP

Nucleotide

• Length: 2232 bp

>NTDB_id=790674 PUP49_RS10015 WP_053278050.1 2210546..2212777(+) (comA) [Pseudomonas chlororaphis strain DSM 21509]
ATGCGCACAGGGATGCTGGCGTTGGCGGCGGGGCTGCTGAGCCTGCGCTTTTTGCCGGCGCTGCCAGCGATCGGATGGCT
GGCCGTACTGCCGGTGGTGGCCTTGATGCTGCTGCCGTTTCGCACCTATCCATTGGCCTTTTTTCTGCTGGGCCTGGCGT
GGGCCTGCATCAGCGCGCAATGGGCGCTGGACGATCGTTTGGCGGAACCGCTCGACGGACAGACCCGATGGCTTGAAGGC
CGGGTGGTGGGGCTGCCGCAGCAGGCTGAGGGCGTGGTGCGTTTCGAGCTGGAAGGCGGACGGGCGCGGCGCGGACGGAT
CCCCCAACGCTTGCGCCTGGCCTGGTATGGCGGGCCACCGGTGCACAGCGGCGAGCGCTGGCGCCTGGCGGTGAAACTCA
AGCGGCCCGTCGGCCTGGTCAATCTGCAAGCCTTCGATCATGAAGCCTGGCTGCTGGCCCAGCGCATCGGCGCCACGGGC
ACGGTCAAGGATGGGCAGCTGCTGGCCGCGACGCAGGAGAGTTGGCGTGCGCGCATTCGCCAGCGCTTGCTGCAAGTCGA
TGCCCATGGGCGCGCTGGTGGCCTGGCGGCGCTGGTACTGGGTGACGGCTCGGGGCTGAGCCGGGAAGACTGGCGTGTCC
TGCAAGACACCGGGACCGTGCATCTGATGGTGATTTCCGGGCAGCACATCAGCTTGCTGGCCGCCGTGATGTACGCCCTG
GTGGCGGGGCTGGCCCGTTACGGCCTGTGGCCGGGACGTTGGCCCTGGCTGCCCTGGGCCTGTGGGTTGGCGTTCGCTTC
GGCCCTGGGGTACGGATTGCTGGCGGGCTTCGATGTGCCGGTGCGTCGTGCCTGCGTGATGGTTGCCCTGGTGCTGATCT
GGCGCCTGCGCTTTCGTCACCTGGGCGCCTGGTGGCCGTTCCTGTTGGCGTTGAATGCGGTGCTGTTGTTCGAGCCGCTG
GCCAGTCTGCAGCCAGGATTCTGGCTGTCCTTTACCGCGGTGGCGGTGCTGATCCTGATCTTCGGCGGGCGCCTGGGAGG
CTGGCGCTGGTGGCAGTCCTGGACCCGCATCCAATGGTTGATCGCCATCGGCCTATGCCCGGTGCTGTTGGCGCTGGGTT
TGCCCATCAGCCTCAGCGGGCCGCTGGCCAATTTGCTGGCGGAACCCTGGATCAGCCTGCTGGTATTGCCACCGGCGTTG
CTCGGCACCTTGTTCCTGGCGGTGCCTTACCTGGGCGAAGGGCTGCTCTGGCTGGCCGGTGGTTTGCTGGACGTGCTGTT
TCGCGGTCTGGCACTGCTGGCTGCCCAATGGCCGGCGTGGGTAGCGCCGGCCATACCGCTCTGGGCCTGGAGCATCAGCG
CGCTGGGGGCCTTTCTGCTGTTGCTGCCCGCGGGCGTGCCGCTGCGTCCCTTGGGATGGTCGATGCTGCTGTTGATGGTG
TTCCCGCCGAGAAACACGCTGCCATACGGCGAGGCGGAAGTCTGGCAGCTGGATGTCGGGCAGGGCCTGGCGGTGCTGGT
GCGGACTCGCGAGCACGCAATGCTGTACGACGCCGGTCCGCGTTTTGGCGACTCCGATCTGGGCGCCCGGGTGGTGCTGC
CGTCCTTGCGCAAGCTGGGCGTCGAGCACCTTGACCTGATGCTGCTCAGCCACGCCGATGCCGATCATGCCGGTGGCGCC
GACGCTATCCAGCGCGGCTTGCCAGTGGCCAGGCTGGTCAGCGGCGATCCCGAGGGCTTGCCGGCCTATTTGCCGGCAGA
GCCTTGCGCCAGCGGCGAGCAGTGGCAATGGGACGGGGTACGTTTTTCCCTGTGGCAATGGGCGGGTGCGCAGAACGGTA
ACCAGAAGTCCTGCGTGATGCAGGTCGAGGCTAAGGGCGAGCGATTGCTGCTGACCGGGGATATCGATGCCCAGGCGGAA
CGTGCGCTGTTGAATACCCCGCTGGCTGTCGAGACCCACTGGTTACAGGCGCCGCACCACGGCAGCCGCAGTTCGTCGTC
CCCGGCCTTGCTCAAGACCCTTGCGCCTTCGGCGGTGCTGATTTCCCGGGGGCACGGCAATGGCTTCGGGCATCCGCACC
CGCAGGTCGTCGAGCGTTATCGCCAGCAAGGGACCGTTATTTACGACAGTGCGGAGCAAGGAGCGCTGCGGTTGATGCTG
GGTACCTACACCGAACCGACGAGCCTGCGGGCGCAGCGACGCTTTTGGCGCAAATGGCCACTATCTCCTTAA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (23-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

• Competence protein (Competence) (198-463)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.673	96.77	0.626