Detailed information NTG0790633

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: PUP58_RS27860
• Genome accession: NZ_CP118148
• Coordinates: 6175645..6176973 (+)
• Length: 442 a.a.
• NCBI ID: WP_009050935.1
• Uniprot ID: A0AB33WW27
• Organism: Pseudomonas chlororaphis strain NCCB 880622
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 6170645..6181973

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PUP58_RS27840 (PUP58_27840)	pgeF	6172144..6172869 (-)	726	WP_009050932.1	peptidoglycan editing factor PgeF	-
PUP58_RS27845 (PUP58_27845)	rluD	6172866..6173828 (-)	963	WP_009050933.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
PUP58_RS27850 (PUP58_27850)	-	6173981..6175003 (+)	1023	WP_007924720.1	outer membrane protein assembly factor BamD	-
PUP58_RS27855 (PUP58_27855)	-	6175138..6175371 (+)	234	WP_007924721.1	PP0621 family protein	-
PUP58_RS27860 (PUP58_27860)	pilR	6175645..6176973 (+)	1329	WP_009050935.1	sigma-54-dependent transcriptional regulator	Regulator
PUP58_RS27865 (PUP58_27865)	thiO	6176970..6178070 (-)	1101	WP_041987302.1	glycine oxidase ThiO	-
PUP58_RS27870 (PUP58_27870)	-	6178125..6178526 (-)	402	WP_041987304.1	type IV pilin protein	-
PUP58_RS27875 (PUP58_27875)	-	6178540..6181608 (-)	3069	WP_041987307.1	pilus assembly protein	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48853.37 Da
• Isoelectric Point: 9.3790

>NTDB_id=790633 PUP58_RS27860 WP_009050935.1 6175645..6176973(+) (pilR) [Pseudomonas chlororaphis strain NCCB 880622]
MSPQQKVLIVDDDPGIREYLEISLGRMQRHTRSARTLGEARHWLAREGFDLCLSDLHLPDGTGLELLEHIQRHRLRMPLA
ILSTCARQETAVRVLKAGAIDFLSKPVALARLRELLNGALPKSIPPKPVTGPLLGNSTAMHKLRGQIHKLAQSQASVYIS
GESGSGKELAARAIHDQGPRASQGFVPINCGAIPPELMESEFFGHRKGSFSGAVEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDVRILCATHKTLQAEVHAGRFRQDLYYRLNVIELAVPPLRARKADIEPLATAILE
RLAQGNGQQLARLQPGALLALQGYDFPGNVRELENLLERAHTLCENRQIEARDLQLTPNGAHPAIAPGPAQVIDLEGYLQ
EVERRLILQALEHTRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=790633 PUP58_RS27860 WP_009050935.1 6175645..6176973(+) (pilR) [Pseudomonas chlororaphis strain NCCB 880622]
ATGAGCCCACAGCAAAAAGTCCTGATCGTCGATGACGATCCAGGCATTCGCGAATATCTGGAAATCAGCCTCGGCCGGAT
GCAGCGCCATACCCGTAGCGCCCGCACCCTGGGTGAAGCGCGTCACTGGCTGGCCCGGGAAGGTTTCGACCTGTGCCTGA
GCGACCTGCATCTGCCCGACGGCACGGGGTTGGAATTACTCGAGCATATCCAGCGCCACCGGCTGCGAATGCCACTGGCC
ATCCTCAGCACCTGCGCCCGCCAGGAAACCGCGGTCCGGGTCCTGAAGGCCGGCGCCATCGACTTCCTGAGCAAACCCGT
GGCCCTGGCCCGCTTGCGCGAGCTACTGAACGGCGCCCTGCCCAAATCGATACCACCGAAGCCTGTTACTGGCCCCTTGC
TGGGCAATTCGACCGCCATGCACAAACTGCGTGGACAGATCCACAAACTGGCCCAGAGTCAGGCCTCGGTCTATATCAGC
GGAGAGTCCGGCAGCGGCAAGGAACTGGCCGCCCGTGCGATTCACGACCAGGGACCACGGGCCAGCCAGGGCTTCGTGCC
GATCAACTGCGGGGCTATTCCGCCGGAACTGATGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGTGCCG
TCGAAGACAAACCCGGCCTGTTCCAGGCAGCGCACGGCGGCACCCTGTTTCTCGATGAGGTGGCCGATCTGCCACTGGCA
ATGCAGGTCAAATTGCTCCGTGCGCTCCAGGAGAAGGCGGTGCGCTGTGTCGGCGGACAGCAGGAGGTCCAGGTTGATGT
GCGCATTCTCTGCGCCACCCACAAGACGCTGCAGGCGGAAGTGCATGCCGGACGCTTTCGCCAGGATCTCTACTACCGCC
TCAACGTGATCGAACTGGCGGTGCCACCGCTACGGGCGCGCAAGGCTGATATCGAACCCTTGGCCACAGCCATCCTCGAG
CGCCTGGCACAGGGCAACGGCCAACAGTTGGCGCGGCTCCAGCCAGGCGCGCTGCTGGCACTCCAGGGCTACGACTTTCC
CGGCAACGTGCGCGAGCTGGAGAACCTGCTCGAACGGGCGCACACCCTGTGCGAGAACCGGCAGATCGAAGCACGCGACC
TGCAACTGACACCAAACGGCGCACACCCGGCCATCGCGCCCGGCCCGGCACAGGTGATCGACCTTGAAGGTTATCTGCAG
GAAGTCGAGCGCCGGCTGATCCTCCAGGCCCTGGAGCACACCCGCTGGAACCGCACGGCGGCGGCCCAGCGCTTGAGCCT
GTCGTTTCGTTCGATGCGCTACAGGCTGAAGAAACTCGGCCTGGATTAG

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-116)

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

• Sigma-54 interaction domain (Sigma54_activat) (133-299)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	66.366	100	0.665
pilR	Acinetobacter baumannii strain A118	43.562	100	0.459