Detailed information NTG0079062

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: PotMrB4_RS08835
• Genome accession: NZ_AP022642
• Coordinates: 1880847..1883069 (+)
• Length: 740 a.a.
• NCBI ID: WP_172433037.1
• Uniprot ID: A0A679GBZ8
• Organism: Metapseudomonas otitidis strain MrB4
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1875847..1888069

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PotMrB4_RS08805 (PtoMrB4_17540)	-	1875948..1876241 (-)	294	WP_107328902.1	phosphodiesterase	-
PotMrB4_RS08810 (PtoMrB4_17550)	-	1876246..1876827 (-)	582	WP_172433034.1	PilZ domain-containing protein	-
PotMrB4_RS08815 (PtoMrB4_17560)	-	1876924..1878174 (+)	1251	WP_172433035.1	lipoprotein-releasing ABC transporter permease subunit	-
PotMrB4_RS08820 (PtoMrB4_17570)	lolD	1878176..1878859 (+)	684	WP_160481182.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
PotMrB4_RS08825 (PtoMrB4_17580)	-	1878861..1880105 (+)	1245	WP_172433036.1	lipoprotein-releasing ABC transporter permease subunit	-
PotMrB4_RS08830 (PtoMrB4_17590)	-	1880169..1880699 (-)	531	WP_044404954.1	DUF2062 domain-containing protein	-
PotMrB4_RS08835 (PtoMrB4_17600)	comA	1880847..1883069 (+)	2223	WP_172433037.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
PotMrB4_RS08840 (PtoMrB4_17610)	-	1883142..1883777 (+)	636	WP_044404948.1	MotA/TolQ/ExbB proton channel family protein	-
PotMrB4_RS08845 (PtoMrB4_17620)	-	1883774..1884217 (+)	444	WP_044404945.1	biopolymer transporter ExbD	-
PotMrB4_RS08850 (PtoMrB4_17630)	lpxK	1884217..1885221 (+)	1005	WP_172433038.1	tetraacyldisaccharide 4'-kinase	-
PotMrB4_RS08855 (PtoMrB4_17640)	-	1885257..1885442 (+)	186	WP_069561688.1	Trm112 family protein	-
PotMrB4_RS08860 (PtoMrB4_17650)	kdsB	1885442..1886206 (+)	765	WP_044404936.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
PotMrB4_RS08865 (PtoMrB4_17660)	-	1886206..1886667 (+)	462	WP_172433039.1	low molecular weight protein-tyrosine-phosphatase	-
PotMrB4_RS08870 (PtoMrB4_17670)	murB	1886664..1887683 (+)	1020	WP_172433040.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 740 a.a.
• Molecular weight: 79356.84 Da
• Isoelectric Point: 9.5487

>NTDB_id=79062 PotMrB4_RS08835 WP_172433037.1 1880847..1883069(+) (comA) [Metapseudomonas otitidis strain MrB4]
MRGFWLALAGGLLALRFLPALPPGWVLLGLAGIGVVLLPWRTRALGVALIGFAWACHCAQVALDDRLDPALDGTTRWLQG
QVVGLPQQDGGVVRFELVPAAIEGLRLPGRMRVSWYGGLEVRSGETWRLAVTLRRPRGLVNPHAFDYEAWLLARHIGATG
TVKAGERIKAAEGPGAWRDDLRQAIQQAEARGRNGTIAALVLGDGSGLSSRDWRHLQDTGTVHLMVISGQHISLLALLLY
GAVAALARLGLWPTRLPWLPCACALALAGALGYGALAGFDVPVQRACLMTALALLWRLRFRRLGVVTPLLAVLCIVLLVD
PLASLRAGFWLSFAAVALLVLVFAGRLGSLPAWRSAWRAQWALSLALTPALMALALPISLSGPLANLVAVPWVSFVSVPL
SLAGTALHAVPGLGEGLLWLAGLSLEGLFLLLGWIAEAMPAWQAPALAVWSWGLVLLGCLLLILPPALPFRLPGLLLLVL
LVWPPLQRLAPGTADVRVLDVGQGLAVLVLTEHHALLYDAGPRQGGFDLGERVVVPALRGLGVRHLDELLLSHADNDHSG
GAEAVVRALSVARVISGEVERLPPGLNAQPCEARQWEWDGVHLRTWRWPEARDSNDRSCVLTLEANGERLHLTGDLGQAA
EAAWVESGEPLAADWLLAPHHGSRSSSSARLLQAVRPRGALISRGARNAFGHPHPQVLARYRALPAALYDTAESGALLIR
LGTHGEVSGLRSQARFWREK

Nucleotide

• Length: 2223 bp

>NTDB_id=79062 PotMrB4_RS08835 WP_172433037.1 1880847..1883069(+) (comA) [Metapseudomonas otitidis strain MrB4]
ATGCGAGGTTTCTGGCTGGCCCTGGCCGGCGGGCTGCTGGCGCTGCGCTTCCTGCCGGCGCTGCCGCCCGGTTGGGTGCT
GCTGGGGCTGGCGGGCATCGGCGTGGTGCTGCTGCCCTGGCGGACGCGAGCGCTCGGCGTTGCCCTGATCGGCTTCGCCT
GGGCCTGTCACTGCGCCCAGGTCGCCCTCGACGACCGGCTCGACCCGGCGCTGGACGGCACCACCCGCTGGCTGCAGGGG
CAGGTGGTCGGCCTGCCGCAGCAGGACGGCGGCGTGGTGCGCTTCGAACTGGTGCCCGCCGCCATCGAAGGGCTGCGCTT
GCCCGGGCGGATGCGGGTGTCCTGGTACGGCGGGCTGGAGGTGCGCAGCGGCGAGACCTGGCGACTGGCCGTCACCCTTC
GCCGTCCGCGTGGCCTGGTGAACCCCCACGCCTTCGACTACGAGGCCTGGCTGCTGGCTCGGCATATCGGCGCCACCGGC
ACGGTGAAGGCGGGCGAGCGGATCAAAGCGGCCGAAGGGCCCGGCGCCTGGCGTGACGACCTGCGCCAGGCCATCCAACA
GGCCGAGGCGAGGGGGCGCAACGGCACCATCGCCGCGCTGGTCCTGGGCGACGGCTCCGGCCTCAGCAGCCGCGACTGGC
GGCACCTGCAGGACACCGGCACGGTCCACCTGATGGTCATCTCCGGGCAGCACATCTCCCTGCTGGCACTGCTGCTCTAC
GGTGCCGTGGCCGCCCTGGCCCGGCTCGGGCTCTGGCCAACGCGCCTGCCCTGGCTGCCCTGTGCCTGCGCGCTGGCCCT
GGCTGGTGCTCTCGGCTATGGGGCGTTGGCCGGGTTCGACGTACCGGTGCAGCGCGCCTGCCTGATGACCGCCCTGGCGC
TGCTCTGGCGCCTGCGTTTCCGCCGGCTCGGGGTGGTCACGCCGCTGTTGGCGGTGCTTTGTATCGTGCTGCTGGTGGAC
CCGCTGGCCTCCCTGCGGGCGGGCTTCTGGCTCTCCTTCGCTGCCGTGGCGCTGCTGGTGCTGGTGTTCGCCGGGCGACT
GGGCAGCCTGCCGGCCTGGCGCAGCGCGTGGCGGGCACAGTGGGCCCTGAGCCTGGCGCTGACCCCGGCGCTGATGGCTC
TTGCCCTGCCCATCAGCCTCAGCGGCCCCCTGGCCAACCTGGTGGCGGTGCCCTGGGTCAGCTTCGTCTCGGTGCCGCTG
TCCCTGGCCGGCACGGCCCTGCACGCCGTGCCCGGCCTGGGTGAGGGCCTGCTGTGGCTGGCGGGGCTTTCCCTGGAGGG
GCTCTTCCTTCTACTGGGCTGGATCGCCGAGGCGATGCCGGCCTGGCAGGCGCCTGCGCTGGCGGTCTGGAGCTGGGGCC
TGGTGCTGCTGGGCTGCCTGCTGCTGATCCTGCCGCCGGCGCTGCCCTTTCGCCTGCCGGGGCTGCTGTTGCTGGTGCTG
CTGGTTTGGCCGCCCCTGCAGCGGCTCGCGCCCGGTACGGCGGATGTCCGCGTGTTGGACGTGGGGCAGGGCCTGGCGGT
GCTGGTGCTCACCGAGCACCACGCCTTGCTGTATGACGCCGGCCCGCGCCAGGGCGGCTTCGACCTGGGCGAGCGGGTGG
TGGTGCCGGCCCTGCGCGGGCTGGGTGTACGGCATCTGGACGAACTGCTGCTGAGCCACGCCGACAACGACCATTCCGGC
GGGGCCGAGGCGGTGGTGCGCGCCCTGTCCGTGGCGCGGGTGATCAGCGGCGAGGTGGAGCGCCTGCCGCCCGGCCTCAA
CGCCCAGCCCTGCGAAGCCCGCCAGTGGGAGTGGGATGGCGTGCACCTGCGCACCTGGCGCTGGCCCGAAGCCCGCGACA
GCAATGATCGCTCCTGCGTGCTCACCCTCGAGGCCAACGGCGAGCGCCTGCACCTGACCGGCGACCTCGGCCAGGCCGCC
GAAGCCGCCTGGGTGGAGAGCGGCGAGCCCCTCGCAGCGGACTGGCTGCTGGCGCCCCACCATGGCAGCCGCAGTTCCTC
CTCGGCGCGCCTGCTGCAGGCGGTGCGGCCGCGCGGGGCGCTGATCTCCCGGGGCGCGCGCAACGCCTTCGGCCATCCCC
ATCCCCAGGTGCTGGCGCGTTACCGTGCACTGCCGGCGGCTCTTTACGACACCGCCGAGTCCGGCGCGCTGCTGATTCGC
CTGGGCACCCACGGCGAGGTGTCGGGACTGCGGAGCCAGGCACGTTTCTGGCGGGAAAAATGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (200-465)

• Domain of unknown function (DUF4131) (DUF4131) (20-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (500-683)

3D structure

• AlphaFold DB: A0A679GBZ8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	61.56	97.027	0.597
comA	Ralstonia pseudosolanacearum GMI1000	34.958	100	0.397