Detailed information NTG0790558

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: PUP75_RS27065
• Genome accession: NZ_CP118145
• Coordinates: 6012785..6014113 (+)
• Length: 442 a.a.
• NCBI ID: WP_274335238.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis strain ATCC 17417
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 6007785..6019113

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PUP75_RS27045 (PUP75_27045)	pgeF	6009274..6009999 (-)	726	WP_009045694.1	peptidoglycan editing factor PgeF	-
PUP75_RS27050 (PUP75_27050)	rluD	6009996..6010958 (-)	963	WP_007924719.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
PUP75_RS27055 (PUP75_27055)	-	6011110..6012132 (+)	1023	WP_007924720.1	outer membrane protein assembly factor BamD	-
PUP75_RS27060 (PUP75_27060)	-	6012267..6012500 (+)	234	WP_062824555.1	PP0621 family protein	-
PUP75_RS27065 (PUP75_27065)	pilR	6012785..6014113 (+)	1329	WP_274335238.1	sigma-54-dependent transcriptional regulator	Regulator
PUP75_RS27070 (PUP75_27070)	thiO	6014110..6015210 (-)	1101	WP_274302082.1	glycine oxidase ThiO	-
PUP75_RS27075 (PUP75_27075)	-	6015265..6015666 (-)	402	WP_007924724.1	type IV pilin protein	-
PUP75_RS27080 (PUP75_27080)	-	6015680..6018751 (-)	3072	WP_274335240.1	pilus assembly protein	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48819.33 Da
• Isoelectric Point: 9.2339

>NTDB_id=790558 PUP75_RS27065 WP_274335238.1 6012785..6014113(+) (pilR) [Pseudomonas chlororaphis strain ATCC 17417]
MSPRQKVLIVDDDPGIREYLEISLGRMQRHTRSARTLGEARHWLAREGFDLCLSDLHLPDGTGLELLEHIQCRQLRMPLA
ILSTCARQETAVHALKAGAIDFLSKPVALARLRELLNGALPGSIPPNPATGPLLGDSAAMHKLRGQIDKLARSQASVYIS
GESGSGKELAARAIHEQGPRASHAFVPVNCGAIPPELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDVRILCATHKALLAEVHAGRFRQDLYYRLNVIELLVPALRARKADIEPLATAILE
RLAQGNGQQLARLQPSALQALQGYDFPGNVRELENLLERAHTLCENRRIEARDLRLTPNGAHPAITPGPAQVINLEKHLQ
EVERRLILQALEHTRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=790558 PUP75_RS27065 WP_274335238.1 6012785..6014113(+) (pilR) [Pseudomonas chlororaphis strain ATCC 17417]
ATGAGCCCACGACAAAAAGTCTTGATCGTCGATGACGATCCAGGCATTCGCGAATATCTGGAAATCAGCCTCGGCCGGAT
GCAACGTCATACCCGCAGCGCCCGCACCCTGGGCGAAGCGCGTCACTGGCTGGCCCGGGAAGGCTTCGACCTGTGCCTGA
GCGACCTGCATCTGCCCGACGGCACGGGGCTGGAATTACTCGAGCATATCCAGTGCCGCCAGCTGCGAATGCCGCTGGCA
ATACTCAGCACCTGCGCCCGCCAGGAAACCGCGGTCCACGCCCTGAAGGCCGGCGCCATCGACTTCCTGAGCAAGCCCGT
GGCCCTGGCGCGCTTGCGCGAGCTGCTGAATGGCGCCCTGCCCGGATCGATACCACCGAACCCTGCCACCGGCCCATTGC
TCGGCGATTCGGCCGCCATGCACAAACTGCGCGGACAAATCGACAAACTGGCCCGGAGCCAGGCCTCGGTCTATATCAGC
GGAGAGTCCGGAAGCGGCAAGGAACTGGCCGCCCGCGCAATCCACGAGCAGGGTCCTCGAGCCAGCCACGCCTTCGTGCC
GGTCAATTGCGGAGCCATCCCACCGGAACTGATGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGCGCTA
TCGAAGACAAGCCCGGCCTGTTCCAGGCGGCGCACGGCGGCACGCTGTTTCTCGATGAGGTGGCCGATCTGCCGCTGGCG
ATGCAGGTCAAATTGCTCCGCGCGCTGCAGGAGAAGGCGGTACGTTGCGTCGGCGGGCAACAGGAGGTCCAGGTCGATGT
ACGCATTCTCTGCGCCACCCACAAGGCGTTGCTGGCGGAAGTGCATGCCGGGCGCTTTCGCCAGGATCTCTACTACCGCC
TGAACGTGATCGAGTTGCTGGTGCCAGCGCTACGGGCGCGCAAGGCTGATATCGAACCCTTGGCCACCGCCATTCTCGAG
CGCCTGGCGCAGGGTAACGGCCAACAACTGGCACGGCTTCAGCCAAGCGCGCTGCAAGCGCTCCAGGGCTACGACTTTCC
CGGTAACGTGCGCGAACTGGAGAACCTGCTCGAACGGGCACACACCCTATGCGAGAACCGGCGGATCGAAGCACGCGACC
TGCGCCTGACACCAAACGGCGCCCACCCGGCCATCACGCCCGGACCGGCACAGGTGATCAACCTTGAGAAACATCTGCAA
GAAGTCGAGCGCCGACTGATCCTCCAGGCCCTGGAGCACACCCGCTGGAACCGAACGGCGGCGGCCCAGCGCTTGAGCCT
GTCGTTTCGTTCGATGCGCTACCGGCTGAAGAAACTCGGCCTGGATTAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-116)

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

• Sigma-54 interaction domain (Sigma54_activat) (134-299)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	67.269	100	0.674
pilR	Acinetobacter baumannii strain A118	43.167	100	0.45