Detailed information NTG0790532

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: PUP51_RS27935
• Genome accession: NZ_CP118144
• Coordinates: 6183270..6184598 (+)
• Length: 442 a.a.
• NCBI ID: WP_274330508.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis strain ATCC 174181
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 6178270..6189598

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PUP51_RS27915 (PUP51_27915)	pgeF	6179759..6180484 (-)	726	WP_274330506.1	peptidoglycan editing factor PgeF	-
PUP51_RS27920 (PUP51_27920)	rluD	6180481..6181443 (-)	963	WP_007924719.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
PUP51_RS27925 (PUP51_27925)	-	6181595..6182617 (+)	1023	WP_007924720.1	outer membrane protein assembly factor BamD	-
PUP51_RS27930 (PUP51_27930)	-	6182752..6182985 (+)	234	WP_062824555.1	PP0621 family protein	-
PUP51_RS27935 (PUP51_27935)	pilR	6183270..6184598 (+)	1329	WP_274330508.1	sigma-54-dependent transcriptional regulator	Regulator
PUP51_RS27940 (PUP51_27940)	thiO	6184595..6185695 (-)	1101	WP_274330510.1	glycine oxidase ThiO	-
PUP51_RS27945 (PUP51_27945)	-	6185750..6186151 (-)	402	WP_007924724.1	type IV pilin protein	-
PUP51_RS27950 (PUP51_27950)	-	6186165..6189236 (-)	3072	WP_274330512.1	pilus assembly protein	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48835.38 Da
• Isoelectric Point: 9.6258

>NTDB_id=790532 PUP51_RS27935 WP_274330508.1 6183270..6184598(+) (pilR) [Pseudomonas chlororaphis strain ATCC 174181]
MSPRQKVLIVDDDPGIREYLEISLGRMQRHTRSARTLGEARHWLAREGFDLCLSDLHLPDGTGLELLEHIQCRQLRMPLA
ILSTCARQETAVQALKAGAIDFLSKPVALARLRELLNGALPGSTPPNPATGPLLGDSAAMHKLRGQIGKLARSQASVYIS
GESGSGKELVARAIHEQGPRARHAFVPVNCGAIPPELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDVRILCATHKALLAEVHAGRFRQDLYYRLNVIELPVPALRARKADIEPLATAILE
RLAQGNGQQLARLQPSALQALQGYDFPGNVRELENLLERAHTLCENRRIEARDLRLTPNGAHPAITPGPAQVINLEKHLQ
EIERRLILQALEHTRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=790532 PUP51_RS27935 WP_274330508.1 6183270..6184598(+) (pilR) [Pseudomonas chlororaphis strain ATCC 174181]
ATGAGCCCACGACAAAAAGTCTTGATCGTCGATGACGATCCAGGCATTCGCGAATACCTGGAAATCAGCCTCGGCCGGAT
GCAACGCCATACCCGTAGCGCCCGCACCCTGGGCGAAGCGCGTCACTGGCTGGCCCGGGAAGGCTTCGACCTGTGCCTGA
GCGACCTGCATTTGCCCGACGGCACGGGGCTGGAATTACTCGAGCATATCCAGTGCCGTCAGCTGCGAATGCCGCTGGCA
ATACTCAGCACCTGCGCCCGCCAGGAAACCGCGGTCCAGGCCCTGAAGGCCGGCGCCATCGACTTCCTGAGCAAGCCCGT
GGCCCTGGCACGCTTGCGCGAGCTGCTGAATGGTGCCCTGCCCGGATCGACACCACCGAACCCTGCCACCGGCCCATTGC
TCGGCGATTCGGCCGCCATGCACAAACTGCGTGGACAAATCGGCAAACTGGCCCGGAGCCAGGCCTCGGTCTATATCAGC
GGAGAGTCCGGAAGCGGCAAGGAACTGGTCGCCCGCGCGATCCACGAGCAGGGTCCTCGAGCCAGACACGCCTTCGTGCC
GGTCAATTGCGGAGCCATCCCACCGGAACTGATGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGCGCTA
TTGAAGACAAGCCCGGCCTGTTCCAGGCAGCGCACGGCGGCACGCTGTTTCTCGATGAGGTGGCCGATCTGCCGCTGGCG
ATGCAGGTCAAATTGCTCCGCGCACTGCAGGAGAAGGCGGTACGTTGCGTCGGCGGGCAGCAGGAGGTCCAGGTCGATGT
ACGCATTCTCTGCGCCACCCACAAGGCGTTGCTGGCGGAAGTGCATGCCGGGCGCTTTCGCCAGGATCTCTACTACCGCC
TGAACGTGATCGAGTTGCCGGTGCCAGCGCTACGGGCGCGCAAGGCTGATATCGAACCCTTGGCCACCGCCATCCTCGAG
CGCCTGGCGCAGGGTAACGGCCAACAACTGGCACGGCTTCAGCCAAGCGCGCTGCAAGCGCTCCAGGGCTACGACTTTCC
CGGTAACGTGCGCGAACTGGAGAACCTGCTCGAACGGGCACACACCCTGTGCGAGAACCGGCGGATCGAAGCACGCGACC
TGCGCCTGACGCCAAACGGCGCCCACCCGGCCATCACGCCCGGACCGGCACAGGTGATCAACCTTGAGAAACACCTGCAA
GAAATCGAGCGCCGACTGATCCTCCAGGCCCTGGAGCACACCCGCTGGAACCGCACGGCGGCGGCCCAGCGCTTGAGCCT
GTCGTTTCGTTCGATGCGCTACCGGCTGAAGAAACTCGGCCTGGATTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

• Response regulator receiver domain (Response_reg) (7-116)

• Sigma-54 interaction domain (Sigma54_activat) (134-299)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	68.172	100	0.683
pilR	Acinetobacter baumannii strain A118	44.035	100	0.459