Detailed information NTG0790506

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: PUP62_RS27935
• Genome accession: NZ_CP118143
• Coordinates: 6182153..6183481 (+)
• Length: 442 a.a.
• NCBI ID: WP_274330508.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis strain ATCC 174182
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 6177153..6188481

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PUP62_RS27915 (PUP62_27915)	pgeF	6178642..6179367 (-)	726	WP_274330506.1	peptidoglycan editing factor PgeF	-
PUP62_RS27920 (PUP62_27920)	rluD	6179364..6180326 (-)	963	WP_007924719.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
PUP62_RS27925 (PUP62_27925)	-	6180478..6181500 (+)	1023	WP_007924720.1	outer membrane protein assembly factor BamD	-
PUP62_RS27930 (PUP62_27930)	-	6181635..6181868 (+)	234	WP_062824555.1	PP0621 family protein	-
PUP62_RS27935 (PUP62_27935)	pilR	6182153..6183481 (+)	1329	WP_274330508.1	sigma-54-dependent transcriptional regulator	Regulator
PUP62_RS27940 (PUP62_27940)	thiO	6183478..6184578 (-)	1101	WP_274330510.1	glycine oxidase ThiO	-
PUP62_RS27945 (PUP62_27945)	-	6184633..6185034 (-)	402	WP_007924724.1	type IV pilin protein	-
PUP62_RS27950 (PUP62_27950)	-	6185048..6188119 (-)	3072	WP_274330512.1	pilus assembly protein	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48835.38 Da
• Isoelectric Point: 9.6258

>NTDB_id=790506 PUP62_RS27935 WP_274330508.1 6182153..6183481(+) (pilR) [Pseudomonas chlororaphis strain ATCC 174182]
MSPRQKVLIVDDDPGIREYLEISLGRMQRHTRSARTLGEARHWLAREGFDLCLSDLHLPDGTGLELLEHIQCRQLRMPLA
ILSTCARQETAVQALKAGAIDFLSKPVALARLRELLNGALPGSTPPNPATGPLLGDSAAMHKLRGQIGKLARSQASVYIS
GESGSGKELVARAIHEQGPRARHAFVPVNCGAIPPELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDVRILCATHKALLAEVHAGRFRQDLYYRLNVIELPVPALRARKADIEPLATAILE
RLAQGNGQQLARLQPSALQALQGYDFPGNVRELENLLERAHTLCENRRIEARDLRLTPNGAHPAITPGPAQVINLEKHLQ
EIERRLILQALEHTRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=790506 PUP62_RS27935 WP_274330508.1 6182153..6183481(+) (pilR) [Pseudomonas chlororaphis strain ATCC 174182]
ATGAGCCCACGACAAAAAGTCTTGATCGTCGATGACGATCCAGGCATTCGCGAATACCTGGAAATCAGCCTCGGCCGGAT
GCAACGCCATACCCGTAGCGCCCGCACCCTGGGCGAAGCGCGTCACTGGCTGGCCCGGGAAGGCTTCGACCTGTGCCTGA
GCGACCTGCATTTGCCCGACGGCACGGGGCTGGAATTACTCGAGCATATCCAGTGCCGTCAGCTGCGAATGCCGCTGGCA
ATACTCAGCACCTGCGCCCGCCAGGAAACCGCGGTCCAGGCCCTGAAGGCCGGCGCCATCGACTTCCTGAGCAAGCCCGT
GGCCCTGGCACGCTTGCGCGAGCTGCTGAATGGTGCCCTGCCCGGATCGACACCACCGAACCCTGCCACCGGCCCATTGC
TCGGCGATTCGGCCGCCATGCACAAACTGCGTGGACAAATCGGCAAACTGGCCCGGAGCCAGGCCTCGGTCTATATCAGC
GGAGAGTCCGGAAGCGGCAAGGAACTGGTCGCCCGCGCGATCCACGAGCAGGGTCCTCGAGCCAGACACGCCTTCGTGCC
GGTCAATTGCGGAGCCATCCCACCGGAACTGATGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGCGCTA
TTGAAGACAAGCCCGGCCTGTTCCAGGCAGCGCACGGCGGCACGCTGTTTCTCGATGAGGTGGCCGATCTGCCGCTGGCG
ATGCAGGTCAAATTGCTCCGCGCACTGCAGGAGAAGGCGGTACGTTGCGTCGGCGGGCAGCAGGAGGTCCAGGTCGATGT
ACGCATTCTCTGCGCCACCCACAAGGCGTTGCTGGCGGAAGTGCATGCCGGGCGCTTTCGCCAGGATCTCTACTACCGCC
TGAACGTGATCGAGTTGCCGGTGCCAGCGCTACGGGCGCGCAAGGCTGATATCGAACCCTTGGCCACCGCCATCCTCGAG
CGCCTGGCGCAGGGTAACGGCCAACAACTGGCACGGCTTCAGCCAAGCGCGCTGCAAGCGCTCCAGGGCTACGACTTTCC
CGGTAACGTGCGCGAACTGGAGAACCTGCTCGAACGGGCACACACCCTGTGCGAGAACCGGCGGATCGAAGCACGCGACC
TGCGCCTGACGCCAAACGGCGCCCACCCGGCCATCACGCCCGGACCGGCACAGGTGATCAACCTTGAGAAACACCTGCAA
GAAATCGAGCGCCGACTGATCCTCCAGGCCCTGGAGCACACCCGCTGGAACCGCACGGCGGCGGCCCAGCGCTTGAGCCT
GTCGTTTCGTTCGATGCGCTACCGGCTGAAGAAACTCGGCCTGGATTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

• Response regulator receiver domain (Response_reg) (7-116)

• Sigma-54 interaction domain (Sigma54_activat) (134-299)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	68.172	100	0.683
pilR	Acinetobacter baumannii strain A118	44.035	100	0.459