Detailed information NTG0790473

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PUP81_RS05285
• Genome accession: NZ_CP118142
• Coordinates: 1116645..1117517 (-)
• Length: 290 a.a.
• NCBI ID: WP_063433051.1
• Uniprot ID: A0AAX3FYP7
• Organism: Pseudomonas chlororaphis strain ATCC 17809
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1111645..1122517

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PUP81_RS05255 (PUP81_05255)	-	1112494..1113930 (-)	1437	WP_063433055.1	undecaprenyl-phosphate glucose phosphotransferase	-
PUP81_RS05260 (PUP81_05260)	-	1114386..1114853 (+)	468	WP_102677068.1	FAD/FMN-containing dehydrogenase	-
PUP81_RS05265 (PUP81_05265)	-	1114850..1115539 (+)	690	WP_124325538.1	energy-coupling factor ABC transporter permease	-
PUP81_RS05270 (PUP81_05270)	-	1115605..1115820 (+)	216	WP_025807496.1	hypothetical protein	-
PUP81_RS05275 (PUP81_05275)	yacG	1115825..1116028 (-)	204	WP_009045670.1	DNA gyrase inhibitor YacG	-
PUP81_RS05280 (PUP81_05280)	coaE	1116025..1116648 (-)	624	WP_124325537.1	dephospho-CoA kinase	-
PUP81_RS05285 (PUP81_05285)	pilD	1116645..1117517 (-)	873	WP_063433051.1	prepilin peptidase	Machinery gene
PUP81_RS05290 (PUP81_05290)	pilC	1117520..1118737 (-)	1218	WP_124325536.1	type II secretion system F family protein	Machinery gene
PUP81_RS05295 (PUP81_05295)	-	1119101..1119517 (+)	417	WP_025807491.1	pilin	-
PUP81_RS05300 (PUP81_05300)	-	1119807..1120163 (+)	357	WP_124325535.1	BON domain-containing protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32068.19 Da
• Isoelectric Point: 7.9950

>NTDB_id=790473 PUP81_RS05285 WP_063433051.1 1116645..1117517(-) (pilD) [Pseudomonas chlororaphis strain ATCC 17809]
MSLTEVLASYPLVFVASVLVLGLIVGSFLNVLIWRLPKMLERDWHAQARDILGLPVEPAGPTYNLLLPHSQCPHCAHPIR
PWENIPVFSYLLLRGRCSACKAPIGRRYPLVELTCGLASAFVAWHFGFGWQAGLMLFLSWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIVNGFDLFVSLHDALWGAVAGYLCLWSVYWLFKLLTGKEGMGHGDFKLLAMFGAWGGWQILPMTLLLASLTG
ALAGVAMLRRNRAQMSTPIPFGPFLAIAGWIALLWGGQITDSYLQFVGFR

Nucleotide

• Length: 873 bp

>NTDB_id=790473 PUP81_RS05285 WP_063433051.1 1116645..1117517(-) (pilD) [Pseudomonas chlororaphis strain ATCC 17809]
ATGTCATTGACTGAGGTCTTGGCCAGCTACCCGCTGGTCTTCGTAGCATCGGTGCTGGTCCTGGGCCTGATTGTCGGCAG
CTTCCTCAACGTGCTGATCTGGCGGCTGCCAAAGATGCTCGAGCGTGACTGGCATGCCCAGGCCCGTGACATCCTGGGGC
TGCCCGTCGAACCTGCCGGGCCGACCTACAACCTGTTGCTCCCGCACTCCCAGTGCCCTCACTGCGCGCACCCGATCCGC
CCCTGGGAAAACATCCCAGTGTTCAGCTACCTGCTGCTGCGCGGACGCTGCTCCGCGTGCAAGGCACCGATCGGCCGGCG
CTATCCGCTGGTGGAGTTGACCTGCGGCCTGGCCTCGGCGTTCGTGGCCTGGCATTTCGGCTTTGGCTGGCAGGCCGGCT
TGATGCTGTTCCTGAGTTGGGGCCTGTTGGCGATGAGCCTGATCGATGCCGACCATCAACTGTTGCCCGACGTGCTGGTA
CTGCCCCTGTTGTGGCTGGGGCTGATCGTCAATGGCTTCGACCTGTTCGTCAGCCTCCACGATGCGCTGTGGGGCGCCGT
GGCCGGCTACCTGTGCCTGTGGTCGGTGTACTGGCTGTTCAAGCTGCTGACCGGCAAGGAAGGCATGGGGCACGGCGATT
TCAAGCTGTTGGCCATGTTCGGCGCCTGGGGCGGCTGGCAGATTCTGCCGATGACCCTGCTGCTGGCCTCACTGACGGGG
GCCCTGGCCGGGGTCGCCATGCTGCGCCGCAACCGCGCGCAAATGTCCACGCCTATCCCTTTCGGTCCCTTTCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTCCTATTTGCAGTTTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.873	97.931	0.528
pilD	Vibrio campbellii strain DS40M4	51.773	97.241	0.503
pilD	Acinetobacter baumannii D1279779	50.185	93.448	0.469
pilD	Acinetobacter nosocomialis M2	49.446	93.448	0.462
pilD	Neisseria gonorrhoeae MS11	47.794	93.793	0.448