Detailed information NTG0790471

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: PUP81_RS05080
• Genome accession: NZ_CP118142
• Coordinates: 1067700..1069028 (-)
• Length: 442 a.a.
• NCBI ID: WP_124325552.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis strain ATCC 17809
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1062700..1074028

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PUP81_RS05065 (PUP81_05065)	-	1063062..1066133 (+)	3072	WP_124325554.1	pilus assembly protein	-
PUP81_RS05070 (PUP81_05070)	-	1066147..1066548 (+)	402	WP_097305151.1	type IV pilin protein	-
PUP81_RS05075 (PUP81_05075)	thiO	1066603..1067703 (+)	1101	WP_124325553.1	glycine oxidase ThiO	-
PUP81_RS05080 (PUP81_05080)	pilR	1067700..1069028 (-)	1329	WP_124325552.1	sigma-54-dependent transcriptional regulator	Regulator
PUP81_RS05085 (PUP81_05085)	-	1069303..1069536 (-)	234	WP_007924721.1	PP0621 family protein	-
PUP81_RS05090 (PUP81_05090)	-	1069671..1070693 (-)	1023	WP_009050934.1	outer membrane protein assembly factor BamD	-
PUP81_RS05095 (PUP81_05095)	rluD	1070846..1071808 (+)	963	WP_025807530.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
PUP81_RS05100 (PUP81_05100)	pgeF	1071805..1072530 (+)	726	WP_124303641.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48824.16 Da
• Isoelectric Point: 8.7307

>NTDB_id=790471 PUP81_RS05080 WP_124325552.1 1067700..1069028(-) (pilR) [Pseudomonas chlororaphis strain ATCC 17809]
MSPRQKVLIVDDDPGVREYLEISLGRMQRHTRSARTLGEARHWLARESFDLCLSDLHLPDGTGLELLEHIQRRRLRMPLA
ILSACARQETAVQALKAGAIDFLSKPVALARLRELLNSALPGSTPAPPATGPLLGDSAAMHKLRGQIGKLAQSQASVYIS
GESGSGKELVARAIHDQGPRASHAFVPVNCGAIPPELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDVRILCATHKALQAEVHAGRFRQDLYYRLNVIELPVPPLRARKDDIEPLATAILE
RLAQGDGQQLARLQPSALLALQGYDFPGNVRELENLLERAHTLCENRRIEARDLRLTSHSAHPAIAPGAAQVIDLEDHLQ
EIERRLILQALEHTRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=790471 PUP81_RS05080 WP_124325552.1 1067700..1069028(-) (pilR) [Pseudomonas chlororaphis strain ATCC 17809]
ATGAGCCCACGGCAAAAAGTCCTGATCGTCGATGACGATCCAGGCGTTCGCGAATATCTGGAAATCAGCCTTGGCCGGAT
GCAACGCCATACCCGCAGCGCCCGTACCTTGGGCGAAGCGCGTCACTGGCTGGCCCGGGAAAGTTTCGACCTGTGCTTGA
GCGACCTGCATCTGCCCGACGGCACGGGACTGGAATTACTCGAGCATATCCAGCGCCGTCGGCTGCGAATGCCGCTGGCA
ATACTCAGTGCCTGCGCCCGCCAGGAAACCGCGGTCCAAGCCCTGAAGGCCGGTGCCATCGACTTCCTGAGCAAACCCGT
GGCCCTGGCCCGCTTGCGCGAACTGCTGAACAGCGCCCTGCCCGGATCGACACCAGCGCCCCCTGCTACCGGCCCCTTGC
TCGGCGATTCGGCCGCCATGCACAAACTGCGCGGACAGATCGGCAAACTGGCCCAGAGCCAGGCATCGGTCTATATCAGC
GGTGAGTCCGGCAGCGGCAAGGAACTGGTCGCCCGTGCCATCCACGACCAGGGACCACGAGCCAGCCACGCCTTCGTGCC
GGTCAACTGCGGGGCCATTCCACCGGAACTGATGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGTGCCA
TCGAAGACAAGCCCGGCCTGTTCCAGGCGGCGCACGGCGGCACCCTGTTTCTCGATGAGGTGGCCGATCTGCCGCTGGCG
ATGCAGGTCAAATTGCTCCGCGCGCTCCAGGAGAAGGCGGTACGCTGTGTCGGCGGGCAGCAGGAGGTCCAGGTCGATGT
GCGCATTCTCTGCGCCACCCACAAGGCGTTGCAGGCGGAAGTGCATGCCGGGCGCTTTCGCCAGGACCTCTACTACCGCC
TGAACGTGATCGAACTGCCGGTGCCACCGCTACGGGCGCGCAAGGACGATATCGAGCCCTTGGCCACAGCCATCCTCGAG
CGACTGGCGCAGGGCGACGGCCAACAACTGGCACGGCTTCAGCCAAGTGCTCTGCTGGCACTCCAGGGCTACGACTTTCC
CGGCAACGTGCGCGAACTGGAGAACCTGCTCGAACGGGCCCATACCCTGTGCGAGAACCGCCGGATCGAAGCGCGCGATC
TGCGCCTGACGTCACACAGCGCCCATCCGGCCATCGCGCCCGGAGCGGCCCAGGTGATCGACCTTGAAGACCATCTGCAA
GAAATCGAGCGCCGGCTGATCCTCCAGGCCCTGGAGCACACCCGCTGGAACCGCACGGCGGCGGCCCAGCGTTTGAGTCT
GTCGTTTCGTTCGATGCGCTACAGGCTGAAGAAACTCGGCCTGGATTAG

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (134-299)

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

• Response regulator receiver domain (Response_reg) (7-116)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	67.778	100	0.69
pilR	Acinetobacter baumannii strain A118	44.009	100	0.457