Detailed information NTG0790428

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: PUP57_RS28770
• Genome accession: NZ_CP118140
• Coordinates: 6373783..6375111 (+)
• Length: 442 a.a.
• NCBI ID: WP_081359715.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis strain ATCC 336632
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 6368783..6380111

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PUP57_RS28750 (PUP57_28750)	pgeF	6370284..6371009 (-)	726	WP_081359717.1	peptidoglycan editing factor PgeF	-
PUP57_RS28755 (PUP57_28755)	rluD	6371006..6371968 (-)	963	WP_081359716.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
PUP57_RS28760 (PUP57_28760)	-	6372121..6373143 (+)	1023	WP_009050934.1	outer membrane protein assembly factor BamD	-
PUP57_RS28765 (PUP57_28765)	-	6373278..6373511 (+)	234	WP_007924721.1	PP0621 family protein	-
PUP57_RS28770 (PUP57_28770)	pilR	6373783..6375111 (+)	1329	WP_081359715.1	sigma-54-dependent transcriptional regulator	Regulator
PUP57_RS28775 (PUP57_28775)	thiO	6375108..6376208 (-)	1101	WP_081359714.1	glycine oxidase ThiO	-
PUP57_RS28780 (PUP57_28780)	-	6376263..6376664 (-)	402	WP_038575642.1	type IV pilin protein	-
PUP57_RS28785 (PUP57_28785)	-	6376678..6379749 (-)	3072	WP_081359713.1	pilus assembly protein	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48752.17 Da
• Isoelectric Point: 7.9404

>NTDB_id=790428 PUP57_RS28770 WP_081359715.1 6373783..6375111(+) (pilR) [Pseudomonas chlororaphis strain ATCC 336632]
MSPRQKVLIVDDDPGIREYLEISLGRMQRHTRSARTLGEARHWLAREGFDLCLSDLHLPDGTGLELLEHIQHHRLRMPLA
ILSTCPHQETAVQALKAGAIDFLSKPVALARLRELLNGPLPGSTPANPATGPLLGDSTAMHKLRMQIDKLAQSQASIYIS
GESGSGKELVARAIHDQGPRAGRAFVPINCGAIPPELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDVRILCATHKALQAEVCAGRFRQDLYYRLNVIELAVPPLRARKADIEPLATAILE
RLAQGNGQQLARLQPGALLALQGYDFPGNVRELENLLERAHTLCENQQIEARDLCLTPNSAHPAIAPGPTQVIDLEGYLQ
EVERRLILQALEHTRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=790428 PUP57_RS28770 WP_081359715.1 6373783..6375111(+) (pilR) [Pseudomonas chlororaphis strain ATCC 336632]
ATGAGCCCACGGCAAAAAGTCCTGATCGTCGATGACGATCCAGGCATTCGCGAATATCTGGAAATCAGCCTCGGCCGGAT
GCAGCGCCATACCCGCAGCGCCCGCACCCTGGGCGAAGCGCGTCACTGGCTGGCCCGGGAAGGTTTCGACCTGTGCCTGA
GCGACCTGCATCTGCCCGACGGTACGGGTCTGGAATTACTCGAGCATATCCAGCACCACCGGCTGCGAATGCCGCTGGCC
ATACTCAGCACCTGCCCCCACCAGGAAACCGCGGTCCAGGCCCTGAAGGCCGGCGCCATCGACTTCCTGAGCAAACCCGT
GGCCCTGGCGCGCCTGCGCGAGCTGCTGAACGGCCCCCTGCCCGGATCGACACCAGCGAACCCAGCTACCGGCCCACTGC
TCGGCGATTCGACCGCCATGCACAAACTGCGCATGCAGATCGACAAACTGGCCCAGAGTCAGGCCTCGATCTATATCAGC
GGAGAGTCCGGCAGCGGCAAGGAACTGGTCGCCCGTGCGATCCACGACCAAGGACCACGGGCCGGGCGGGCCTTCGTGCC
AATCAACTGCGGGGCCATTCCGCCGGAACTGATGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGCGCCA
TCGAAGACAAACCCGGCCTGTTCCAGGCAGCGCACGGCGGCACCCTGTTTCTCGATGAGGTGGCCGATCTACCGCTGGCG
ATGCAGGTCAAATTGCTCCGTGCGCTCCAGGAGAAGGCGGTGCGCTGTGTCGGCGGGCAGCAGGAGGTCCAGGTCGATGT
GCGCATTCTCTGCGCCACCCACAAGGCACTGCAGGCGGAAGTGTGTGCCGGGCGTTTTCGTCAGGACCTCTACTACCGCC
TCAACGTGATCGAGCTGGCGGTGCCACCACTAAGGGCGCGCAAGGCTGATATCGAACCCTTGGCCACAGCCATACTCGAG
CGCCTGGCGCAGGGCAACGGCCAACAGTTGGCGCGGCTCCAGCCAGGCGCGCTGCTGGCACTCCAGGGCTACGACTTTCC
CGGCAACGTGCGCGAACTGGAGAACCTGCTCGAACGGGCGCACACCCTGTGCGAGAACCAGCAGATCGAAGCACGCGATC
TATGCCTGACGCCCAATAGCGCCCACCCGGCCATCGCGCCCGGCCCGACACAGGTGATCGACCTTGAAGGTTATCTGCAG
GAAGTCGAGCGCCGGCTGATCCTCCAGGCCCTGGAGCACACCCGCTGGAACCGCACGGCGGCGGCCCAGCGCTTGAGCCT
GTCGTTTCGTTCGATGCGCTACAGGCTGAAGAAACTCGGCCTGGATTAA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (134-299)

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

• Response regulator receiver domain (Response_reg) (7-116)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	66.444	100	0.676
pilR	Acinetobacter baumannii strain A118	44.009	100	0.457