Detailed information NTG0790402

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: PUP68_RS29165
• Genome accession: NZ_CP118139
• Coordinates: 6482926..6484254 (+)
• Length: 442 a.a.
• NCBI ID: WP_274321572.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis strain DSM 295781
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 6477926..6489254

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PUP68_RS29145 (PUP68_29145)	pgeF	6479425..6480150 (-)	726	WP_274321574.1	peptidoglycan editing factor PgeF	-
PUP68_RS29150 (PUP68_29150)	rluD	6480147..6481109 (-)	963	WP_025807530.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
PUP68_RS29155 (PUP68_29155)	-	6481262..6482284 (+)	1023	WP_009050934.1	outer membrane protein assembly factor BamD	-
PUP68_RS29160 (PUP68_29160)	-	6482419..6482652 (+)	234	WP_274321573.1	PP0621 family protein	-
PUP68_RS29165 (PUP68_29165)	pilR	6482926..6484254 (+)	1329	WP_274321572.1	sigma-54-dependent transcriptional regulator	Regulator
PUP68_RS29170 (PUP68_29170)	thiO	6484251..6485351 (-)	1101	WP_274321571.1	glycine oxidase ThiO	-
PUP68_RS29175 (PUP68_29175)	-	6485406..6485807 (-)	402	WP_025807536.1	type IV pilin protein	-
PUP68_RS29180 (PUP68_29180)	-	6485821..6488892 (-)	3072	WP_274321570.1	pilus assembly protein	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48923.28 Da
• Isoelectric Point: 8.2651

>NTDB_id=790402 PUP68_RS29165 WP_274321572.1 6482926..6484254(+) (pilR) [Pseudomonas chlororaphis strain DSM 295781]
MSPRQKVLIVDNDPGIREYLEISLGRMQRHTRSARTLDEARHWLAREGFDLCLSDLHLPDGTGLELLEHIQHRRLRMPLA
ILSTCARQEAAAQALKAGAIDFLSKPVALARLRELLNSALLGSTPAPPATGPLLGDSAAMHKLRGQIDKLAQSQASVYIS
GESGSGKELVARAIHDQGSRASRAFVPINCGAIPPELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDVRILCATHKALQAEVRAGRFRQDLYYRLNVIELPVPPLRARKDDIEPLAITILE
RLAQGDGQQLARLQPSALLALQGYDFPGNVRELENLLERAHTLCENRQIDVQDLRLTPSSAQPAIAPDPAQVIDLEGYLQ
EVERRLILQALEHTRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=790402 PUP68_RS29165 WP_274321572.1 6482926..6484254(+) (pilR) [Pseudomonas chlororaphis strain DSM 295781]
ATGAGCCCACGGCAAAAAGTCCTGATCGTCGATAACGATCCAGGCATTCGCGAATATCTGGAAATCAGCCTCGGCCGGAT
GCAACGCCATACCCGCAGCGCCCGTACCTTGGACGAGGCGCGTCACTGGCTGGCCCGGGAAGGTTTCGACCTGTGCCTGA
GCGACCTGCATCTGCCCGACGGCACGGGGCTGGAATTACTCGAGCATATCCAGCACCGTCGGCTGCGAATGCCGCTGGCG
ATACTCAGCACCTGCGCCCGCCAGGAAGCCGCGGCCCAGGCCCTGAAGGCCGGTGCTATCGACTTTCTGAGCAAACCCGT
GGCCCTGGCCCGCCTGCGCGAACTGCTGAACAGCGCCCTGCTCGGATCGACGCCAGCGCCCCCTGCTACCGGCCCCTTGC
TCGGCGATTCGGCCGCCATGCACAAACTGCGCGGACAGATCGACAAACTGGCCCAGAGTCAGGCCTCGGTCTATATCAGC
GGTGAGTCCGGCAGCGGCAAGGAATTGGTCGCCCGTGCCATCCACGACCAGGGATCACGGGCCAGCCGCGCCTTCGTGCC
GATCAACTGCGGAGCTATTCCGCCGGAACTGATGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGTGCCA
TCGAAGACAAGCCCGGTTTGTTCCAGGCAGCGCACGGCGGCACCCTGTTTCTCGATGAGGTGGCCGATCTGCCGCTGGCG
ATGCAGGTCAAATTGCTCCGTGCGCTCCAGGAGAAGGCCGTGCGCTGTGTCGGTGGGCAGCAGGAGGTCCAGGTCGATGT
GCGCATTCTCTGCGCCACCCACAAGGCGCTGCAGGCGGAAGTGCGTGCCGGGCGTTTTCGTCAGGACCTCTACTACCGCC
TGAACGTGATCGAACTGCCGGTGCCACCGCTACGGGCACGCAAGGACGATATCGAACCCTTGGCCATAACCATCCTCGAG
CGCCTGGCGCAGGGCGACGGCCAACAGCTGGCACGGCTTCAGCCAAGCGCACTGTTGGCGCTCCAGGGTTACGACTTTCC
CGGCAATGTGCGCGAACTGGAGAACCTGCTCGAACGGGCGCACACCCTGTGCGAGAACCGGCAGATCGACGTGCAGGATC
TGCGCCTGACGCCAAGCAGCGCCCAGCCGGCCATCGCGCCCGACCCGGCACAGGTGATCGACCTTGAAGGTTATCTGCAA
GAAGTCGAGCGCCGGCTGATCCTCCAGGCCCTGGAGCACACCCGCTGGAACCGCACGGCGGCGGCCCAGCGTTTGAGCCT
GTCGTTTCGTTCGATGCGCTACCGACTAAAGAAACTCGGCCTGGATTAG

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (134-299)

• Response regulator receiver domain (Response_reg) (7-116)

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	67.117	100	0.674
pilR	Acinetobacter baumannii strain A118	44.444	100	0.462