Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   PUP77_RS01960 Genome accession   NZ_CP118138
Coordinates   383703..385934 (-) Length   743 a.a.
NCBI ID   WP_274320845.1    Uniprot ID   -
Organism   Pseudomonas chlororaphis strain DSM 295782     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 378703..390934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUP77_RS01925 (PUP77_01925) murB 379080..380099 (-) 1020 WP_053278054.1 UDP-N-acetylmuramate dehydrogenase -
  PUP77_RS01930 (PUP77_01930) - 380096..380560 (-) 465 WP_210475030.1 low molecular weight protein-tyrosine-phosphatase -
  PUP77_RS01935 (PUP77_01935) kdsB 380560..381324 (-) 765 WP_097302592.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PUP77_RS01940 (PUP77_01940) - 381321..381506 (-) 186 WP_007931663.1 Trm112 family protein -
  PUP77_RS01945 (PUP77_01945) lpxK 381530..382540 (-) 1011 WP_053278051.1 tetraacyldisaccharide 4'-kinase -
  PUP77_RS01950 (PUP77_01950) - 382540..382968 (-) 429 WP_009047818.1 ExbD/TolR family protein -
  PUP77_RS01955 (PUP77_01955) exbB 382965..383600 (-) 636 WP_025804353.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PUP77_RS01960 (PUP77_01960) comA 383703..385934 (-) 2232 WP_274320845.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PUP77_RS01965 (PUP77_01965) - 386082..386597 (+) 516 WP_053278049.1 DUF2062 domain-containing protein -
  PUP77_RS01970 (PUP77_01970) - 386646..387425 (-) 780 WP_053278048.1 ABC transporter permease -
  PUP77_RS01975 (PUP77_01975) - 387422..388354 (-) 933 WP_053278047.1 ABC transporter ATP-binding protein -
  PUP77_RS01980 (PUP77_01980) - 388487..389110 (-) 624 WP_053278046.1 glutathione S-transferase family protein -
  PUP77_RS01985 (PUP77_01985) - 389153..389812 (-) 660 WP_053278045.1 transglutaminase-like domain-containing protein -

Sequence

Protein


Download         Length: 743 a.a.        Molecular weight: 81356.40 Da        Isoelectric Point: 10.0609

>NTDB_id=790359 PUP77_RS01960 WP_274320845.1 383703..385934(-) (comA) [Pseudomonas chlororaphis strain DSM 295782]
MRTGMLALAAGLLSLRFLPALPAIGWLAVLPVVALMLLPFRTYPLAFFLLGLAWACISAQWALDDRLAEPLDGQTRWLEG
RVVGLPQQAEGVVRFELEGGRARRGRIPQRLRLAWYGGPPVHSGERWRLAVKLKRPVGLVNLQAFDHEAWLLAQRIGATG
TVKDGQLLAATQESWRARIRQRLLQVDAHGRAGGLAALVLGDGSGLSREDWRVLQDTGTVHLMVISGQHISLLAAVMYAL
VAGLARYGLWPGRWPWLPWACGLAFASALGYGLLAGFDVPVRRACVMVALVLIWRLRFRHLGAWWPFLLALNAVLLFEPL
ASLQPGFWLSFTAVAVLILIFGGRLGGWRWWQSWTRIQWLIAIGLCPVLLALGLPISLSGPLANLLAEPWISLLVLPPAL
LGTLFLAVPYLGEGLLWLAGGLLDVLFRGLALLAAQWPAWVAPAIPLWAWSISALGAFLLLLPAGVPLRPLGWPMLLLMV
FPPRNTLPYGEAEVWQLDVGQGLAVLVRTREHAMLYDAGPRFGDSDLGARVVLPSLRKLGVEHLDLMLLSHADADHAGGA
DAIQRGLPVARLVSGDPEGLPAYLPAEPCASGEQWQWDGVRFSLWQWAGAQNGNQKSCVMQVEAKGERLLLTGDIDAQAE
RALLNTPLAVETHWLQAPHHGSRSSSSPALLKTLAPSAVLISRGHGNGFGHPHPQVVERYRQQGTVIYDSAEQGALRLML
GTYTEPTSLRAQRRFWRKWPLSP

Nucleotide


Download         Length: 2232 bp        

>NTDB_id=790359 PUP77_RS01960 WP_274320845.1 383703..385934(-) (comA) [Pseudomonas chlororaphis strain DSM 295782]
ATGCGCACAGGGATGCTGGCGTTGGCGGCGGGGCTGCTGAGCCTGCGCTTTTTGCCGGCGCTGCCAGCGATCGGATGGCT
GGCCGTACTGCCGGTGGTGGCCTTGATGCTGCTGCCGTTTCGCACCTATCCATTGGCCTTTTTTCTGCTGGGCCTGGCGT
GGGCCTGCATCAGCGCGCAATGGGCGCTGGACGATCGTTTGGCGGAACCGCTCGACGGACAGACCCGATGGCTTGAAGGC
CGGGTGGTGGGGCTGCCGCAGCAGGCTGAGGGCGTGGTGCGTTTCGAGCTGGAAGGCGGACGGGCGCGGCGCGGACGGAT
CCCCCAACGCTTGCGCCTGGCCTGGTATGGCGGGCCACCGGTGCACAGCGGCGAGCGCTGGCGCCTGGCGGTGAAACTCA
AGCGGCCCGTCGGCCTGGTCAATCTGCAAGCCTTCGATCATGAAGCCTGGCTGCTGGCCCAGCGCATCGGCGCCACGGGC
ACGGTCAAGGATGGGCAGCTGCTGGCCGCGACGCAGGAGAGTTGGCGTGCGCGCATTCGCCAGCGCTTGCTGCAAGTCGA
TGCCCATGGGCGCGCTGGTGGCCTGGCGGCGCTGGTACTGGGTGACGGCTCGGGGCTGAGCCGGGAAGACTGGCGTGTCC
TGCAAGACACCGGGACCGTGCATCTGATGGTGATTTCCGGGCAGCACATCAGCTTGCTGGCCGCCGTGATGTACGCCCTG
GTGGCGGGGCTGGCCCGTTACGGCCTGTGGCCGGGACGTTGGCCCTGGCTGCCCTGGGCCTGTGGGTTGGCGTTCGCTTC
GGCCCTGGGGTACGGATTGCTGGCGGGCTTCGATGTGCCGGTGCGTCGTGCCTGCGTGATGGTTGCCCTGGTGCTGATCT
GGCGCCTGCGCTTTCGTCACCTGGGCGCCTGGTGGCCGTTCCTGTTGGCGTTGAATGCGGTGCTGTTGTTCGAGCCGCTG
GCCAGTCTGCAGCCAGGATTCTGGCTGTCCTTTACCGCGGTGGCGGTGCTGATCCTGATCTTCGGCGGGCGCCTGGGAGG
CTGGCGCTGGTGGCAGTCCTGGACCCGCATCCAATGGTTGATCGCCATCGGCCTATGCCCGGTGCTGTTGGCGCTGGGTT
TGCCCATCAGCCTCAGCGGGCCGCTGGCCAATTTGCTGGCGGAACCCTGGATCAGCCTGCTGGTATTGCCACCGGCGTTG
CTCGGCACCTTGTTCCTGGCGGTGCCTTACCTGGGCGAAGGGCTGCTCTGGCTGGCCGGTGGTTTGCTGGACGTGCTGTT
TCGCGGTCTGGCACTGCTGGCTGCCCAATGGCCGGCGTGGGTAGCGCCGGCCATACCGCTCTGGGCCTGGAGCATCAGCG
CGCTGGGGGCCTTTCTGCTGTTGCTGCCCGCGGGCGTGCCGCTGCGTCCCTTGGGATGGCCGATGCTGCTGTTGATGGTG
TTCCCGCCGAGAAACACGCTGCCATACGGCGAGGCGGAAGTCTGGCAGCTGGATGTCGGGCAGGGCCTGGCGGTGCTGGT
GCGGACTCGCGAGCACGCAATGCTGTACGACGCCGGTCCGCGTTTTGGCGACTCCGATCTGGGCGCCCGGGTGGTGCTGC
CGTCCTTGCGCAAGCTGGGCGTCGAGCACCTTGACCTGATGCTGCTCAGCCACGCCGATGCCGATCATGCCGGTGGCGCC
GACGCTATCCAGCGCGGCTTGCCAGTGGCCAGGCTGGTCAGCGGCGATCCCGAGGGCTTGCCGGCCTATTTGCCGGCAGA
GCCTTGCGCCAGCGGCGAGCAGTGGCAATGGGACGGGGTACGTTTTTCCCTGTGGCAATGGGCGGGTGCGCAGAACGGTA
ACCAGAAGTCCTGCGTGATGCAGGTCGAGGCTAAGGGCGAGCGATTGCTGCTGACCGGGGATATCGATGCCCAGGCGGAA
CGTGCGCTGTTGAATACCCCGCTGGCTGTCGAGACCCACTGGTTACAGGCGCCGCACCACGGCAGCCGCAGTTCGTCGTC
CCCGGCCTTGCTCAAGACCCTTGCGCCTTCGGCGGTGCTGATTTCCCGGGGGCACGGCAATGGCTTCGGGCATCCGCACC
CGCAGGTCGTCGAGCGTTATCGCCAGCAAGGGACCGTTATTTACGACAGTGCGGAGCAAGGAGCGCTGCGGTTGATGCTG
GGTACCTACACCGAACCGACGAGCCTGCGGGCGCAGCGACGCTTTTGGCGCAAATGGCCACTATCTCCTTAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(23-167)

Competence protein (Competence)

(198-463)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-685)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

64.673

96.77

0.626