Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PUP77_RS01955 Genome accession   NZ_CP118138
Coordinates   382965..383600 (-) Length   211 a.a.
NCBI ID   WP_025804353.1    Uniprot ID   A0AAQ1FKP2
Organism   Pseudomonas chlororaphis strain DSM 295782     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 377965..388600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUP77_RS01920 (PUP77_01920) - 378356..378826 (-) 471 WP_016702177.1 (2Fe-2S)-binding protein -
  PUP77_RS01925 (PUP77_01925) murB 379080..380099 (-) 1020 WP_053278054.1 UDP-N-acetylmuramate dehydrogenase -
  PUP77_RS01930 (PUP77_01930) - 380096..380560 (-) 465 WP_210475030.1 low molecular weight protein-tyrosine-phosphatase -
  PUP77_RS01935 (PUP77_01935) kdsB 380560..381324 (-) 765 WP_097302592.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PUP77_RS01940 (PUP77_01940) - 381321..381506 (-) 186 WP_007931663.1 Trm112 family protein -
  PUP77_RS01945 (PUP77_01945) lpxK 381530..382540 (-) 1011 WP_053278051.1 tetraacyldisaccharide 4'-kinase -
  PUP77_RS01950 (PUP77_01950) - 382540..382968 (-) 429 WP_009047818.1 ExbD/TolR family protein -
  PUP77_RS01955 (PUP77_01955) exbB 382965..383600 (-) 636 WP_025804353.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PUP77_RS01960 (PUP77_01960) comA 383703..385934 (-) 2232 WP_274320845.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PUP77_RS01965 (PUP77_01965) - 386082..386597 (+) 516 WP_053278049.1 DUF2062 domain-containing protein -
  PUP77_RS01970 (PUP77_01970) - 386646..387425 (-) 780 WP_053278048.1 ABC transporter permease -
  PUP77_RS01975 (PUP77_01975) - 387422..388354 (-) 933 WP_053278047.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22918.08 Da        Isoelectric Point: 7.4247

>NTDB_id=790358 PUP77_RS01955 WP_025804353.1 382965..383600(-) (exbB) [Pseudomonas chlororaphis strain DSM 295782]
MWELVISGGWMMLPIILSSIAAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKDKLKELRAHSPLGEILAAGLAN
SKHGREVMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
SGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=790358 PUP77_RS01955 WP_025804353.1 382965..383600(-) (exbB) [Pseudomonas chlororaphis strain DSM 295782]
GTGTGGGAATTGGTCATATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATTGCCGCGGTCGGCATCATTGC
CGAGCGCCTGTGGACCCTGCGGGCCAGCCGTGTTACTCCGCCGCATCTGCTGGGGCAGGTCTGGCGCTGGATCAAGGACA
AGCAACTCAATAAGGACAAACTCAAGGAACTGCGCGCCCATTCTCCTCTGGGGGAAATCCTCGCGGCCGGCCTGGCCAAC
TCCAAGCATGGCCGCGAGGTCATGAAGGAGTGCATCGAGGAAGCCGCCGCCCGGGTCATTCATGAACTGGAGCGCTACCT
CAATGCCCTCGGCACCATCGCCGCCATGGCGCCGCTGCTGGGCTTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGGTCGGGCATGACCACCAACGCCGCGGTGCTGGCCGGTGGTATCTCCAAGGCGCTGATTACCACCGCG
TCCGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGTTTCCTGCAACGCCGGGTCGATGAACTGGTGGTGGGTAT
GGAGCAGGAAGCCATCAAACTGGTCGAAGTGGTGCAAGGCGACCGCGACGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.73

100

0.867