Detailed information NTG0790349

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: PUP65_RS29240
• Genome accession: NZ_CP118137
• Coordinates: 6503862..6505190 (+)
• Length: 442 a.a.
• NCBI ID: WP_124325552.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis strain NCCB 47033
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 6498862..6510190

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PUP65_RS29220 (PUP65_29220)	pgeF	6500360..6501085 (-)	726	WP_124303641.1	peptidoglycan editing factor PgeF	-
PUP65_RS29225 (PUP65_29225)	rluD	6501082..6502044 (-)	963	WP_025807530.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
PUP65_RS29230 (PUP65_29230)	-	6502197..6503219 (+)	1023	WP_009050934.1	outer membrane protein assembly factor BamD	-
PUP65_RS29235 (PUP65_29235)	-	6503354..6503587 (+)	234	WP_007924721.1	PP0621 family protein	-
PUP65_RS29240 (PUP65_29240)	pilR	6503862..6505190 (+)	1329	WP_124325552.1	sigma-54-dependent transcriptional regulator	Regulator
PUP65_RS29245 (PUP65_29245)	thiO	6505187..6506287 (-)	1101	WP_124325553.1	glycine oxidase ThiO	-
PUP65_RS29250 (PUP65_29250)	-	6506342..6506743 (-)	402	WP_097305151.1	type IV pilin protein	-
PUP65_RS29255 (PUP65_29255)	-	6506757..6509828 (-)	3072	WP_124325554.1	pilus assembly protein	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48824.16 Da
• Isoelectric Point: 8.7307

>NTDB_id=790349 PUP65_RS29240 WP_124325552.1 6503862..6505190(+) (pilR) [Pseudomonas chlororaphis strain NCCB 47033]
MSPRQKVLIVDDDPGVREYLEISLGRMQRHTRSARTLGEARHWLARESFDLCLSDLHLPDGTGLELLEHIQRRRLRMPLA
ILSACARQETAVQALKAGAIDFLSKPVALARLRELLNSALPGSTPAPPATGPLLGDSAAMHKLRGQIGKLAQSQASVYIS
GESGSGKELVARAIHDQGPRASHAFVPVNCGAIPPELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDVRILCATHKALQAEVHAGRFRQDLYYRLNVIELPVPPLRARKDDIEPLATAILE
RLAQGDGQQLARLQPSALLALQGYDFPGNVRELENLLERAHTLCENRRIEARDLRLTSHSAHPAIAPGAAQVIDLEDHLQ
EIERRLILQALEHTRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=790349 PUP65_RS29240 WP_124325552.1 6503862..6505190(+) (pilR) [Pseudomonas chlororaphis strain NCCB 47033]
ATGAGCCCACGGCAAAAAGTCCTGATCGTCGATGACGATCCAGGCGTTCGCGAATATCTGGAAATCAGCCTTGGCCGGAT
GCAACGCCATACCCGCAGCGCCCGTACCTTGGGCGAAGCGCGTCACTGGCTGGCCCGGGAAAGTTTCGACCTGTGCTTGA
GCGACCTGCATCTGCCCGACGGCACGGGACTGGAATTACTCGAGCATATCCAGCGCCGTCGGCTGCGAATGCCGCTGGCA
ATACTCAGTGCCTGCGCCCGCCAGGAAACCGCGGTCCAAGCCCTGAAGGCCGGTGCCATCGACTTCCTGAGCAAACCCGT
GGCCCTGGCCCGCTTGCGCGAACTGCTGAACAGCGCCCTGCCCGGATCGACACCAGCGCCCCCTGCTACCGGCCCCTTGC
TCGGCGATTCGGCCGCCATGCACAAACTGCGCGGACAGATCGGCAAACTGGCCCAGAGCCAGGCATCGGTCTATATCAGC
GGTGAGTCCGGCAGCGGCAAGGAACTGGTCGCCCGTGCCATCCACGACCAGGGACCACGAGCCAGCCACGCCTTCGTGCC
GGTCAACTGCGGGGCCATTCCACCGGAACTGATGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGTGCCA
TCGAAGACAAGCCCGGCCTGTTCCAGGCGGCGCACGGCGGCACCCTGTTTCTCGATGAGGTGGCCGATCTGCCGCTGGCG
ATGCAGGTCAAATTGCTCCGCGCGCTCCAGGAGAAGGCGGTACGCTGTGTCGGCGGGCAGCAGGAGGTCCAGGTCGATGT
GCGCATTCTCTGCGCCACCCACAAGGCGTTGCAGGCGGAAGTGCATGCCGGGCGCTTTCGCCAGGACCTCTACTACCGCC
TGAACGTGATCGAACTGCCGGTGCCACCGCTACGGGCGCGCAAGGACGATATCGAGCCCTTGGCCACAGCCATCCTCGAG
CGACTGGCGCAGGGCGACGGCCAACAACTGGCACGGCTTCAGCCAAGTGCTCTGCTGGCACTCCAGGGCTACGACTTTCC
CGGCAACGTGCGCGAACTGGAGAACCTGCTCGAACGGGCCCATACCCTGTGCGAGAACCGCCGGATCGAAGCGCGCGATC
TGCGCCTGACGTCACACAGCGCCCATCCGGCCATCGCGCCCGGAGCGGCCCAGGTGATCGACCTTGAAGACCATCTGCAA
GAAATCGAGCGCCGGCTGATCCTCCAGGCCCTGGAGCACACCCGCTGGAACCGCACGGCGGCGGCCCAGCGTTTGAGTCT
GTCGTTTCGTTCGATGCGCTACAGGCTGAAGAAACTCGGCCTGGATTAG

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (134-299)

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

• Response regulator receiver domain (Response_reg) (7-116)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	67.778	100	0.69
pilR	Acinetobacter baumannii strain A118	44.009	100	0.457