Detailed information NTG0790297

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: PUP76_RS14840
• Genome accession: NZ_CP118135
• Coordinates: 3225582..3226910 (-)
• Length: 442 a.a.
• NCBI ID: WP_274302083.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis strain NCCB 820532
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3220582..3231910

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PUP76_RS14825 (PUP76_14825)	-	3220944..3224015 (+)	3072	WP_274302081.1	pilus assembly protein	-
PUP76_RS14830 (PUP76_14830)	-	3224029..3224430 (+)	402	WP_007924724.1	type IV pilin protein	-
PUP76_RS14835 (PUP76_14835)	thiO	3224485..3225585 (+)	1101	WP_274302082.1	glycine oxidase ThiO	-
PUP76_RS14840 (PUP76_14840)	pilR	3225582..3226910 (-)	1329	WP_274302083.1	sigma-54-dependent transcriptional regulator	Regulator
PUP76_RS14845 (PUP76_14845)	-	3227195..3227428 (-)	234	WP_062824555.1	PP0621 family protein	-
PUP76_RS14850 (PUP76_14850)	-	3227563..3228585 (-)	1023	WP_007924720.1	outer membrane protein assembly factor BamD	-
PUP76_RS14855 (PUP76_14855)	rluD	3228737..3229699 (+)	963	WP_007924719.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
PUP76_RS14860 (PUP76_14860)	pgeF	3229696..3230421 (+)	726	WP_274302084.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48841.47 Da
• Isoelectric Point: 9.6259

>NTDB_id=790297 PUP76_RS14840 WP_274302083.1 3225582..3226910(-) (pilR) [Pseudomonas chlororaphis strain NCCB 820532]
MSPRQKVLIVDDDPGIREYLEISLGRMQRHTRSARTLGEARHWLAREGFDLCLSDLHLPDGTGLELLEHIQCRQLRMPLA
ILSTCARQETAVHALKAGAIDFLSKPVALARLRELLNGALPGSIPPNPATGPLLGDSAAMHKLRGQIGKLARSQASVYIS
GESGSGKELVARAIHDLGPRARHAFVPVNCGAIPPELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDVRILCATHKALLAEVHAGRFRQDLYYRLNVIELPVPALRARKADIEPLATAILE
RLAQGNGQQLARLQPSALQVLQGYDFPGNVRELENLLERAHTLCENRRIEARDLRLTPNGAHPAITPGPAQVINLEKHLQ
EVERRLILQALEHTRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=790297 PUP76_RS14840 WP_274302083.1 3225582..3226910(-) (pilR) [Pseudomonas chlororaphis strain NCCB 820532]
ATGAGCCCACGACAAAAAGTCTTGATCGTCGATGACGATCCAGGCATTCGCGAATATCTGGAAATCAGCCTCGGCCGGAT
GCAACGCCATACCCGCAGCGCCCGCACCCTGGGCGAAGCGCGTCACTGGCTGGCGCGGGAAGGCTTCGACCTGTGCCTGA
GCGACCTGCATTTGCCCGACGGCACGGGGCTGGAATTACTCGAGCATATCCAGTGCCGCCAGCTGCGAATGCCGCTGGCA
ATACTCAGCACCTGCGCCCGCCAGGAAACCGCGGTCCACGCCCTGAAGGCCGGCGCCATCGACTTCCTGAGCAAGCCCGT
GGCCCTGGCGCGCTTGCGCGAGCTGCTGAATGGCGCCCTGCCCGGATCGATACCACCGAACCCTGCCACCGGCCCATTGC
TCGGCGATTCGGCCGCCATGCACAAACTGCGCGGACAAATCGGCAAACTGGCCCGGAGCCAGGCCTCGGTCTATATCAGC
GGAGAGTCCGGAAGCGGCAAGGAACTGGTCGCCCGCGCGATCCACGACCTGGGTCCTCGGGCCAGACACGCCTTCGTGCC
GGTCAATTGCGGAGCCATCCCACCGGAACTGATGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGCGCTA
TCGAAGACAAGCCCGGCCTGTTCCAGGCAGCGCACGGCGGCACGCTGTTTCTCGATGAGGTGGCCGATCTGCCGCTGGCG
ATGCAGGTCAAATTGCTCCGCGCGCTGCAGGAGAAGGCGGTACGTTGCGTCGGCGGGCAACAGGAGGTCCAGGTCGATGT
ACGCATTCTCTGCGCCACCCACAAGGCGTTGCTGGCGGAAGTGCATGCCGGGCGCTTTCGCCAGGATCTCTACTACCGCC
TGAACGTGATCGAGTTGCCGGTGCCAGCGCTACGGGCGCGCAAGGCTGATATCGAACCCTTGGCCACCGCCATCCTCGAG
CGCCTGGCGCAGGGTAACGGCCAACAACTGGCACGGCTTCAGCCAAGCGCGCTGCAAGTGCTCCAGGGCTACGACTTTCC
CGGTAACGTGCGCGAACTGGAGAACTTGCTCGAACGGGCACACACCCTGTGCGAGAACCGGCGGATCGAAGCACGCGACC
TGCGCCTGACACCAAACGGCGCCCACCCGGCCATCACGCCCGGACCGGCACAGGTGATCAACCTTGAGAAACATCTGCAA
GAAGTCGAGCGCCGACTGATCCTCCAGGCCCTGGAGCACACCCGCTGGAACCGCACGGCGGCGGCCCAGCGCTTGAGCTT
GTCGTTTCGTTCGATGCGCTACCGGCTGAAGAAACTCGGCCTGGATTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

• Sigma-54 interaction domain (Sigma54_activat) (134-299)

• Response regulator receiver domain (Response_reg) (7-116)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	67.269	100	0.674
pilR	Acinetobacter baumannii strain A118	43.601	100	0.455