Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PUP76_RS01605 Genome accession   NZ_CP118135
Coordinates   334596..335231 (-) Length   211 a.a.
NCBI ID   WP_007931657.1    Uniprot ID   A0AAX2DUM3
Organism   Pseudomonas chlororaphis strain NCCB 820532     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 329596..340231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUP76_RS01570 (PUP76_01570) - 329994..330464 (-) 471 WP_025804349.1 (2Fe-2S)-binding protein -
  PUP76_RS01575 (PUP76_01575) murB 330712..331731 (-) 1020 WP_274301254.1 UDP-N-acetylmuramate dehydrogenase -
  PUP76_RS01580 (PUP76_01580) - 331728..332192 (-) 465 WP_007931667.1 low molecular weight protein-tyrosine-phosphatase -
  PUP76_RS01585 (PUP76_01585) kdsB 332192..332956 (-) 765 WP_123573894.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PUP76_RS01590 (PUP76_01590) - 332953..333138 (-) 186 WP_007931663.1 Trm112 family protein -
  PUP76_RS01595 (PUP76_01595) lpxK 333161..334171 (-) 1011 WP_274301255.1 tetraacyldisaccharide 4'-kinase -
  PUP76_RS01600 (PUP76_01600) - 334171..334599 (-) 429 WP_007931660.1 ExbD/TolR family protein -
  PUP76_RS01605 (PUP76_01605) exbB 334596..335231 (-) 636 WP_007931657.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PUP76_RS01610 (PUP76_01610) comA 335334..337565 (-) 2232 WP_274301256.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PUP76_RS01615 (PUP76_01615) - 337714..338229 (+) 516 WP_007931653.1 DUF2062 domain-containing protein -
  PUP76_RS01620 (PUP76_01620) - 338278..339057 (-) 780 WP_007931651.1 ABC transporter permease -
  PUP76_RS01625 (PUP76_01625) - 339054..339986 (-) 933 WP_007931649.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22947.12 Da        Isoelectric Point: 8.1069

>NTDB_id=790280 PUP76_RS01605 WP_007931657.1 334596..335231(-) (exbB) [Pseudomonas chlororaphis strain NCCB 820532]
MWELVKSGGWMMLPIILSSIVAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKDKLKELRAHSPLGEILAAGLAN
SKHGREVMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTSNAAVLAGGISKALITTA
SGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=790280 PUP76_RS01605 WP_007931657.1 334596..335231(-) (exbB) [Pseudomonas chlororaphis strain NCCB 820532]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATTGTCGCGGTCGGCATCATTGC
CGAGCGTCTATGGACCCTGCGGGCCAGCCGCGTTACCCCGCCTCATCTGCTGGGCCAGGTGTGGCGTTGGATCAAGGACA
AACAGCTGAACAAGGACAAGCTCAAGGAACTGCGCGCCCATTCGCCCCTGGGCGAGATCCTGGCCGCCGGCCTGGCCAAC
TCCAAGCATGGCCGCGAGGTTATGAAAGAGTGCATCGAGGAAGCCGCCGCCCGGGTCATCCACGAACTGGAGCGCTACCT
CAATGCCCTCGGCACCATCGCCGCCATGGCCCCGCTGCTGGGCTTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGCTCGGGGATGACCAGCAACGCCGCGGTGCTGGCCGGTGGTATCTCCAAGGCGCTGATCACCACCGCG
TCCGGCCTGATGGTCGGTATTCCGGCAGTGTTCTTCCACCGTTTCCTGCAACGCCGGGTCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCCATCAAGCTGGTCGAAGTGGTGCAGGGCGACCGCGATGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.73

100

0.867