Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   PTI97_RS14325 Genome accession   NZ_CP118099
Coordinates   2797509..2798024 (+) Length   171 a.a.
NCBI ID   WP_026824728.1    Uniprot ID   -
Organism   Exiguobacterium marinum strain a-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2792509..2803024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PTI97_RS14295 (PTI97_14295) - 2793113..2793895 (+) 783 WP_026824734.1 ParB/RepB/Spo0J family partition protein -
  PTI97_RS14300 (PTI97_14300) yyaC 2793868..2794494 (-) 627 WP_026824733.1 spore protease YyaC -
  PTI97_RS14305 (PTI97_14305) - 2794665..2795606 (+) 942 WP_051545930.1 mechanosensitive ion channel family protein -
  PTI97_RS14310 (PTI97_14310) - 2795596..2795799 (+) 204 WP_026824731.1 DUF951 domain-containing protein -
  PTI97_RS14315 (PTI97_14315) ychF 2795953..2797053 (+) 1101 WP_026824730.1 redox-regulated ATPase YchF -
  PTI97_RS14320 (PTI97_14320) rpsF 2797184..2797471 (+) 288 WP_026824729.1 30S ribosomal protein S6 -
  PTI97_RS14325 (PTI97_14325) ssbA 2797509..2798024 (+) 516 WP_026824728.1 single-stranded DNA-binding protein Machinery gene
  PTI97_RS14330 (PTI97_14330) rpsR 2798068..2798298 (+) 231 WP_015880232.1 30S ribosomal protein S18 -
  PTI97_RS14335 (PTI97_14335) - 2798450..2800441 (+) 1992 WP_274356814.1 DHH family phosphoesterase -
  PTI97_RS14340 (PTI97_14340) rplI 2800438..2800881 (+) 444 WP_214700773.1 50S ribosomal protein L9 -
  PTI97_RS14345 (PTI97_14345) dnaB 2800899..2802251 (+) 1353 WP_026824725.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18456.23 Da        Isoelectric Point: 5.0077

>NTDB_id=790158 PTI97_RS14325 WP_026824728.1 2797509..2798024(+) (ssbA) [Exiguobacterium marinum strain a-1]
MINRVVLVGRLTRDPEMRYTQSGIAVTRFTLACDRPFAGQDGKRETDFIDCVVWRKQAENVAQYLKKGSMAGVDGRLQIS
SYEGQDGQRRYRAEVVADSVRFLEPRGASGQREQAPSGDVFSGGESSGSGWGAGAASTSSQSSNQSSNKGFDADPFSGGN
KIDLSDDDLPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=790158 PTI97_RS14325 WP_026824728.1 2797509..2798024(+) (ssbA) [Exiguobacterium marinum strain a-1]
ATGATTAACCGAGTTGTGTTAGTTGGTCGATTGACTCGCGATCCGGAAATGCGTTATACGCAGAGCGGAATCGCCGTAAC
ACGCTTTACTCTCGCTTGCGATCGTCCATTTGCTGGGCAGGATGGGAAGCGCGAGACGGACTTTATTGATTGTGTCGTTT
GGCGCAAACAAGCAGAGAACGTAGCACAATACTTGAAAAAGGGCAGCATGGCCGGCGTTGACGGTCGCCTTCAAATCAGT
AGTTACGAAGGACAAGATGGCCAACGTCGTTACCGGGCAGAAGTAGTCGCCGACAGCGTACGCTTCCTTGAACCACGCGG
AGCTTCAGGGCAACGTGAGCAAGCACCATCTGGAGACGTCTTCAGTGGTGGTGAGTCAAGTGGATCAGGATGGGGCGCAG
GAGCTGCTTCGACTTCATCTCAGTCCTCAAACCAGTCTTCAAATAAAGGTTTTGATGCAGATCCGTTCTCGGGTGGCAAC
AAAATTGACTTGTCAGACGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.107

100

0.55
  ssb Latilactobacillus sakei subsp. sakei 23K

50.581

100

0.509