Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   Q7642_RS08380 Genome accession   NZ_CP131652
Coordinates   1751527..1752789 (-) Length   420 a.a.
NCBI ID   WP_031874965.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 2008S01-206     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1746527..1757789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7642_RS08355 (Q7642_08345) - 1746725..1747393 (-) 669 WP_000805952.1 uroporphyrinogen-III synthase -
  Q7642_RS08360 (Q7642_08350) hemC 1747415..1748341 (-) 927 WP_001230218.1 hydroxymethylbilane synthase -
  Q7642_RS08365 (Q7642_08355) - 1748383..1749198 (-) 816 WP_001157329.1 cytochrome c biogenesis protein -
  Q7642_RS08370 (Q7642_08360) hemA 1749220..1750566 (-) 1347 WP_000545463.1 glutamyl-tRNA reductase -
  Q7642_RS08375 (Q7642_08365) yihA 1750783..1751373 (-) 591 WP_000867697.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  Q7642_RS08380 (Q7642_08370) clpX 1751527..1752789 (-) 1263 WP_031874965.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  Q7642_RS08385 (Q7642_08375) tig 1752940..1754241 (-) 1302 WP_000127576.1 trigger factor -
  Q7642_RS08390 (Q7642_08380) - 1754289..1754399 (-) 111 WP_001790560.1 hypothetical protein -
  Q7642_RS08395 (Q7642_08385) - 1754404..1755333 (-) 930 WP_001280012.1 hypothetical protein -
  Q7642_RS08400 (Q7642_08390) - 1755352..1755960 (-) 609 WP_000032657.1 NUDIX domain-containing protein -
  Q7642_RS08405 (Q7642_08395) rplT 1756102..1756458 (-) 357 WP_001138360.1 50S ribosomal protein L20 -
  Q7642_RS08410 (Q7642_08400) rpmI 1756505..1756705 (-) 201 WP_001125540.1 50S ribosomal protein L35 -
  Q7642_RS08415 (Q7642_08405) infC 1756734..1757261 (-) 528 WP_001807711.1 translation initiation factor IF-3 -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 46283.43 Da        Isoelectric Point: 4.2645

>NTDB_id=790158 Q7642_RS08380 WP_031874965.1 1751527..1752789(-) (clpX) [Staphylococcus aureus strain 2008S01-206]
MFKFNEDEENLKCSFCGKDQDQVKKLVAGSGVYICNECIELCSEIVEEELAQNTSEAITELTTPKEIMDHLNEYVIGQEK
AKKSLAVAVYNHYKRIQQLGPKEDDVELQKSNIALIGPTGSGKTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENIL
LRLIQAADFDIDKAEKGIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQEMIQIDTTN
ILFILGGAFDGIEEVIKRRLGEKVIGFSSNEADKYDEQALLAQIRPEDLQAYGLIPEFIGRVPIVANLETLDVTALKNIL
TQPKNALVKQYTKMLELDDVDLEFTEEALSAISEKAIERKTGARGLRSIIEESLIDIMFDVPSNENVTKVVITAQTINEE
TEPELYDAEGNLINNSKTSA

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=790158 Q7642_RS08380 WP_031874965.1 1751527..1752789(-) (clpX) [Staphylococcus aureus strain 2008S01-206]
ATGTTTAAATTCAATGAAGATGAAGAAAATTTGAAATGCTCTTTCTGCGGAAAAGACCAAGATCAAGTAAAAAAACTTGT
AGCAGGAAGTGGTGTATATATTTGTAATGAGTGTATTGAATTATGCTCAGAAATCGTCGAAGAAGAATTAGCTCAAAACA
CTTCTGAAGCGATTACAGAATTAACTACTCCTAAAGAAATTATGGATCATTTAAACGAATATGTTATTGGTCAAGAAAAA
GCTAAAAAATCTTTAGCTGTGGCTGTTTATAACCACTATAAGCGTATTCAACAATTAGGACCAAAAGAAGATGATGTTGA
ATTACAAAAAAGTAACATTGCCTTAATTGGGCCAACAGGTAGTGGTAAAACATTATTAGCTCAAACATTAGCCAAGACGT
TGAATGTACCATTTGCAATTGCAGATGCGACAAGTTTAACTGAAGCTGGTTATGTAGGCGATGATGTTGAAAATATCTTG
TTGAGATTAATTCAAGCAGCTGACTTTGACATTGATAAAGCCGAAAAAGGTATTATTTATGTAGATGAAATTGATAAAAT
TGCACGTAAATCTGAAAACACATCTATAACACGTGACGTTTCAGGTGAAGGTGTTCAACAAGCATTGCTTAAAATCTTAG
AAGGTACAACTGCAAGTGTTCCACCACAAGGTGGACGCAAACATCCAAACCAAGAAATGATTCAAATTGATACAACAAAT
ATCTTATTTATTCTTGGTGGTGCCTTTGATGGTATTGAAGAAGTGATTAAGCGCCGCCTTGGTGAAAAAGTTATTGGTTT
CTCAAGCAATGAAGCTGATAAATATGATGAACAAGCATTATTAGCACAAATTCGCCCAGAAGATTTGCAAGCCTATGGTT
TGATTCCTGAATTTATCGGACGTGTGCCAATTGTAGCTAATTTAGAAACATTAGATGTAACTGCGTTGAAAAACATCTTA
ACTCAACCTAAAAATGCACTTGTGAAACAATATACTAAAATGCTGGAATTAGATGATGTGGATTTAGAGTTCACTGAAGA
AGCTTTATCAGCAATTAGTGAAAAAGCAATTGAAAGAAAAACAGGTGCGCGTGGTTTACGTTCAATCATAGAAGAATCGT
TAATCGATATTATGTTTGATGTGCCTTCTAACGAAAATGTAACGAAGGTAGTTATTACAGCACAAACAATTAATGAAGAA
ACTGAACCAGAACTATACGACGCAGAAGGTAATTTAATTAATAATAGTAAAACATCAGCTTAA

Domains

Predicted by InterProScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(109-305)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-389)

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

66.667

95

0.633
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.456

94.048

0.531