Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   QMM10_RS02450 Genome accession   NZ_AP025938
Coordinates   478736..479785 (+) Length   349 a.a.
NCBI ID   WP_000653771.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900701057     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 473736..484785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMM10_RS02420 (PC1044_04670) - 474939..475214 (+) 276 WP_000386177.1 hypothetical protein -
  QMM10_RS02425 (PC1044_04680) dnaJ 475419..476555 (+) 1137 WP_001836079.1 molecular chaperone DnaJ -
  QMM10_RS02430 - 476877..477071 (-) 195 WP_050207116.1 hypothetical protein -
  QMM10_RS02435 (PC1044_04690) - 477233..477520 (-) 288 WP_000777760.1 hypothetical protein -
  QMM10_RS02440 (PC1044_04700) - 477530..477940 (-) 411 WP_001278301.1 HIT family protein -
  QMM10_RS02445 (PC1044_04710) pptA 478008..478739 (+) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  QMM10_RS02450 (PC1044_04720) pptB 478736..479785 (+) 1050 WP_000653771.1 ABC transporter permease Regulator
  QMM10_RS02455 (PC1044_04730) - 479953..480282 (-) 330 WP_050207112.1 hypothetical protein -
  QMM10_RS02460 (PC1044_04740) - 480559..480897 (+) 339 WP_050249616.1 LytTR family DNA-binding domain-containing protein -
  QMM10_RS02465 (PC1044_04750) comE/blpR 480902..481639 (+) 738 WP_001219145.1 response regulator transcription factor Regulator
  QMM10_RS02470 (PC1044_04760) - 481653..482993 (+) 1341 WP_050212001.1 sensor histidine kinase -
  QMM10_RS02475 (PC1044_04770) blpC 483035..483190 (-) 156 WP_044791640.1 quorum-sensing system pheromone BlpC -
  QMM10_RS02480 - 483247..484608 (-) 1362 Protein_490 bacteriocin secretion accessory protein -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 40556.62 Da        Isoelectric Point: 10.0008

>NTDB_id=79015 QMM10_RS02450 WP_000653771.1 478736..479785(+) (pptB) [Streptococcus pneumoniae strain PZ900701057]
MKDLFLKRKQAFRKECLGYLRYVLNDHFVLFLLVLLGFLAYQYSQLLQHFPENHWPILLFVGITSVLLLLWGGIATYMEA
PDKLFLLVGEEEIKLHLKRQTGISLVFWLFVQTLFLLLFAPLFLAMGYGLPVFLLYVLLLGVGKYFHFRQKASKFFTETG
LDWDYVISQESKRKQVLLRFFALFTQVKGISNSVKRRAYLDFILKAVQKVPGKIWQNLYLRSYLRNGDLFALSLRLLLLS
VLAQVFIEQAWIATAVVVLFNYLLLFQLLALYHAFDYQYLTQLFPLDKGQKEKGLQEVVRGLTSFVLLVELVVGLITFQE
KLALLALLGAGLVLLVLYLPYQVKRQMQD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=79015 QMM10_RS02450 WP_000653771.1 478736..479785(+) (pptB) [Streptococcus pneumoniae strain PZ900701057]
ATGAAAGACTTGTTTTTAAAGAGAAAGCAGGCCTTTCGTAAGGAGTGTCTTGGTTATCTGCGCTATGTGCTCAATGACCA
CTTTGTCTTGTTCCTGCTTGTCCTGTTGGGCTTTCTAGCCTACCAGTACAGTCAACTCTTACAACATTTTCCTGAAAATC
ATTGGCCTATCCTTTTGTTTGTAGGAATTACGTCTGTTTTACTTTTACTTTGGGGAGGAATTGCCACCTATATGGAGGCT
CCAGACAAGCTCTTTCTCTTAGTTGGAGAAGAGGAAATCAAGCTCCATCTCAAGCGTCAAACTGGCATTTCCCTAGTCTT
TTGGCTCTTTGTACAGACCCTTTTCTTGCTGTTATTTGCGCCTTTATTTTTAGCAATGGGTTATGGCTTGCCAGTTTTTC
TGCTCTATGTGCTTTTATTGGGGGTAGGAAAATATTTCCACTTTCGTCAAAAGGCCAGCAAATTTTTCACTGAAACTGGG
CTGGACTGGGACTATGTCATTTCCCAAGAAAGCAAGCGTAAGCAAGTCTTGCTTCGTTTCTTTGCCCTCTTTACGCAGGT
CAAGGGAATTTCAAACAGCGTTAAGCGTCGTGCCTATCTGGACTTTATCTTAAAGGCTGTTCAGAAGGTGCCTGGGAAGA
TTTGGCAAAATCTCTATCTGCGTTCTTATCTGCGAAATGGCGACCTCTTTGCTCTCAGTCTTCGTCTTCTCTTACTTTCC
GTACTGGCGCAGGTTTTTATCGAGCAAGCTTGGATTGCGACAGCAGTGGTAGTTCTCTTTAACTACCTCTTGCTCTTCCA
GTTGCTGGCCCTCTATCATGCCTTTGACTACCAGTATTTGACCCAACTCTTTCCGCTGGACAAGGGGCAAAAGGAAAAAG
GCTTACAGGAGGTAGTTCGAGGATTGACCAGTTTTGTTTTACTTGTGGAATTAGTTGTTGGGTTGATTACCTTCCAAGAA
AAACTGGCCCTTCTAGCCTTACTAGGAGCTGGTTTGGTTTTACTAGTCTTGTATTTGCCTTATCAGGTAAAACGTCAGAT
GCAGGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

47.714

100

0.479

  pptB Streptococcus thermophilus LMD-9

46.857

100

0.47


Multiple sequence alignment