Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PUW42_RS00080 Genome accession   NZ_CP118095
Coordinates   16521..17087 (+) Length   188 a.a.
NCBI ID   WP_101659224.1    Uniprot ID   A0A2I1K8B8
Organism   Aerococcus christensenii strain VSI03     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 11521..22087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW42_RS00060 (PUW42_00060) gyrA 12119..14686 (+) 2568 WP_274980825.1 DNA gyrase subunit A -
  PUW42_RS08265 - 15177..15771 (+) 595 Protein_12 transposase -
  PUW42_RS00075 (PUW42_00075) rpsF 16179..16484 (+) 306 WP_060777451.1 30S ribosomal protein S6 -
  PUW42_RS00080 (PUW42_00080) ssb 16521..17087 (+) 567 WP_101659224.1 single-stranded DNA-binding protein Machinery gene
  PUW42_RS00085 (PUW42_00085) rpsR 17113..17352 (+) 240 WP_060776649.1 30S ribosomal protein S18 -
  PUW42_RS00090 (PUW42_00090) - 18645..20687 (+) 2043 WP_274980826.1 DHH family phosphoesterase -
  PUW42_RS00095 (PUW42_00095) rplI 20769..21218 (+) 450 WP_060776651.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20904.71 Da        Isoelectric Point: 4.4167

>NTDB_id=790053 PUW42_RS00080 WP_101659224.1 16521..17087(+) (ssb) [Aerococcus christensenii strain VSI03]
MINNVVLVGRLTRDVDLRYTQSGTAVANFTVACDRNYRNAQGETQTDFISCVMWRKSAENFARFTRKGSLVGIEGTIQTR
SYDNQQGQKVYVTEVLANNFSLLESKSVTEQRPRSNNNVIAGGTTNFDGNSYNQPFPNYDQQDSSPNKTNSFNGVADPFS
TEDTNPFPSENLSDNNASINIADDDLPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=790053 PUW42_RS00080 WP_101659224.1 16521..17087(+) (ssb) [Aerococcus christensenii strain VSI03]
ATGATTAACAACGTTGTACTAGTCGGACGATTAACACGAGATGTTGATTTACGTTATACGCAAAGTGGCACAGCAGTGGC
TAATTTTACGGTAGCTTGCGATCGAAATTATCGAAATGCTCAAGGTGAAACACAGACAGATTTTATATCTTGTGTGATGT
GGAGAAAATCTGCAGAGAATTTTGCGCGTTTTACAAGAAAAGGGTCATTAGTAGGTATTGAAGGAACCATTCAAACAAGA
AGTTACGATAATCAACAAGGACAGAAAGTTTATGTTACAGAAGTTTTAGCGAATAATTTTAGTTTGTTAGAATCTAAAAG
TGTTACAGAACAAAGACCTCGTTCGAATAATAATGTAATTGCTGGTGGAACAACTAATTTTGATGGAAATAGTTATAATC
AGCCGTTTCCAAATTACGATCAACAAGATTCTTCTCCAAATAAAACAAACAGCTTTAATGGAGTAGCGGATCCATTTTCA
ACAGAGGATACAAATCCGTTTCCTTCTGAGAATCTTTCGGATAATAATGCCTCTATTAATATAGCTGATGATGATCTCCC
ATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I1K8B8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

52.083

100

0.532
  ssbA Bacillus subtilis subsp. subtilis str. 168

46.809

100

0.468