Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   Q7644_RS11105 Genome accession   NZ_CP131645
Coordinates   2084744..2085169 (-) Length   141 a.a.
NCBI ID   WP_341931109.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 2004S05-027     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2079744..2090169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7644_RS11070 (Q7644_11130) - 2081759..2082133 (-) 375 Protein_2142 pilin -
  Q7644_RS11075 (Q7644_11135) - 2082248..2082385 (-) 138 Protein_2143 pilin -
  Q7644_RS11080 (Q7644_11140) - 2082398..2082672 (-) 275 Protein_2144 pilin -
  Q7644_RS11085 (Q7644_11145) - 2082699..2082932 (-) 234 Protein_2145 pilin -
  Q7644_RS11090 (Q7644_11150) - 2083004..2083368 (-) 365 Protein_2146 pilin -
  Q7644_RS11095 (Q7644_11155) - 2083408..2083779 (-) 372 Protein_2147 pilin -
  Q7644_RS11100 (Q7644_11160) - 2084335..2084691 (-) 357 Protein_2148 pilin -
  Q7644_RS11105 (Q7644_11165) pilE 2084744..2085169 (-) 426 WP_341931109.1 pilin Machinery gene
  Q7644_RS11110 (Q7644_11170) - 2085221..2085529 (+) 309 Protein_2150 NAD(P)-dependent oxidoreductase -
  Q7644_RS11115 (Q7644_11175) metG 2085604..2087658 (-) 2055 WP_047951312.1 methionine--tRNA ligase -
  Q7644_RS11120 (Q7644_11180) glmS 2087774..2089612 (-) 1839 WP_003697846.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15212.20 Da        Isoelectric Point: 8.9655

>NTDB_id=789999 Q7644_RS11105 WP_341931109.1 2084744..2085169(-) (pilE) [Neisseria gonorrhoeae strain 2004S05-027]
MASSSSIIGKYVESVTVTNGVVTAKMKSDGVNKEIQGKKLSLWAKRQAGSVKWFCGQPVTRDKAVTDDAVKDVTGNDKIE
TKHLPSTCRCFQIGSVKWFCGQPVTRDNAGTDAVTADTTGKDKEIDTKHLPSTCRDKSSAE

Nucleotide


Download         Length: 426 bp        

>NTDB_id=789999 Q7644_RS11105 WP_341931109.1 2084744..2085169(-) (pilE) [Neisseria gonorrhoeae strain 2004S05-027]
GTGGCATCTTCTTCATCAATCATAGGCAAATATGTTGAAAGCGTTACGGTCACAAACGGCGTCGTTACCGCCAAAATGAA
ATCAGACGGCGTAAACAAAGAAATCCAAGGCAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGCCGGTTCGGTAAAATGGT
TCTGCGGACAGCCGGTTACGCGCGACAAAGCCGTCACCGACGACGCCGTCAAAGACGTCACCGGCAACGACAAAATCGAA
ACCAAGCACCTGCCGTCAACCTGCCGTTGCTTTCAAATCGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCGA
CAACGCCGGCACCGACGCCGTCACCGCCGACACCACCGGCAAAGACAAAGAAATCGACACCAAGCACCTGCCGTCAACCT
GCCGCGATAAATCATCTGCCGAATAA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(3-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

69.663

63.121

0.44
  pilE Neisseria gonorrhoeae MS11

66.265

58.865

0.39