Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   Q7645_RS09030 Genome accession   NZ_CP131641
Coordinates   1724480..1724956 (+) Length   158 a.a.
NCBI ID   WP_341966373.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 2010C02-038     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1719480..1729956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7645_RS08995 (Q7645_09040) - 1720399..1721019 (-) 621 WP_003696151.1 fused MFS/spermidine synthase -
  Q7645_RS09000 (Q7645_09045) - 1721218..1721594 (-) 377 Protein_1749 transposase -
  Q7645_RS09005 (Q7645_09050) - 1721903..1722028 (-) 126 Protein_1750 IS110 family transposase -
  Q7645_RS09010 (Q7645_09055) - 1722576..1723010 (+) 435 Protein_1751 pilin -
  Q7645_RS09015 (Q7645_09060) - 1723144..1723521 (+) 378 Protein_1752 pilin -
  Q7645_RS09020 (Q7645_09065) - 1723699..1724075 (+) 377 Protein_1753 pilin -
  Q7645_RS09025 (Q7645_09070) - 1724094..1724423 (+) 330 Protein_1754 pilin -
  Q7645_RS09030 (Q7645_09075) pilE 1724480..1724956 (+) 477 WP_341966373.1 pilin Machinery gene
  Q7645_RS09035 (Q7645_09080) pilE 1725051..1725473 (+) 423 WP_341966374.1 pilin Machinery gene
  Q7645_RS09040 (Q7645_09085) - 1725928..1726326 (+) 399 Protein_1757 pilin -
  Q7645_RS09045 (Q7645_09090) lpxC 1726811..1727734 (+) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  Q7645_RS09050 (Q7645_09095) - 1727862..1728254 (+) 393 Protein_1759 pilin -
  Q7645_RS09055 (Q7645_09100) - 1728377..1728495 (+) 119 Protein_1760 pilin -
  Q7645_RS09060 (Q7645_09105) - 1729311..1729816 (+) 506 Protein_1761 pilin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17120.23 Da        Isoelectric Point: 9.9821

>NTDB_id=789920 Q7645_RS09030 WP_341966373.1 1724480..1724956(+) (pilE) [Neisseria gonorrhoeae strain 2010C02-038]
MASPSDIKGKYVKSVTVTNGVVTAQMNPSGVNKEIQDKRLSLWAKRENGSVKWFCGQPVKRDNANAAKDDVTATMNSSNV
NKEIQGKKLSLWARRQDGSVKWFCGQPVKRDNANADTVTADATGNDGKIDTKHLPSTCRDAASAGCIETPPTAFYKNT

Nucleotide


Download         Length: 477 bp        

>NTDB_id=789920 Q7645_RS09030 WP_341966373.1 1724480..1724956(+) (pilE) [Neisseria gonorrhoeae strain 2010C02-038]
GTGGCATCCCCCTCCGACATCAAAGGCAAATATGTTAAAAGCGTTACGGTCACAAACGGCGTCGTTACCGCCCAAATGAA
TCCAAGCGGCGTAAACAAAGAAATCCAAGACAAAAGACTCTCCCTGTGGGCCAAGCGTGAAAACGGTTCGGTAAAATGGT
TCTGCGGACAGCCGGTTAAGCGCGACAACGCCAACGCCGCCAAAGACGACGTCACCGCCACAATGAATTCAAGCAACGTA
AACAAAGAAATCCAAGGCAAAAAACTCTCCCTGTGGGCCAGGCGTCAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCC
GGTTAAGCGCGACAACGCCAACGCCGACACCGTCACCGCCGACGCCACCGGCAACGACGGCAAAATCGACACCAAGCACC
TGCCGTCAACCTGCCGCGACGCAGCATCTGCCGGTTGCATAGAAACACCACCTACGGCTTTCTATAAAAATACCTAA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(65-139)

Pilin (bacterial filament) (Pilin)

(2-59)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

49.645

89.241

0.443
  pilE Neisseria gonorrhoeae strain FA1090

45.139

91.139

0.411