Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   Q7646_RS11145 Genome accession   NZ_CP131638
Coordinates   2115169..2115540 (-) Length   123 a.a.
NCBI ID   WP_284040615.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 2014E02-242     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2110169..2120540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7646_RS11110 (Q7646_11190) pilE 2110620..2110763 (-) 144 WP_050171221.1 hypothetical protein Machinery gene
  Q7646_RS11115 (Q7646_11195) - 2111066..2111184 (-) 119 Protein_2151 pilin -
  Q7646_RS11120 (Q7646_11200) - 2111307..2111705 (-) 399 Protein_2152 pilin -
  Q7646_RS11125 (Q7646_11205) lpxC 2111833..2112756 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  Q7646_RS11130 (Q7646_11210) pilE 2113452..2113877 (-) 426 WP_341948186.1 pilin Machinery gene
  Q7646_RS11135 (Q7646_11215) - 2113973..2114404 (-) 432 Protein_2155 pilin -
  Q7646_RS11140 (Q7646_11220) - 2114931..2115284 (-) 354 Protein_2156 pilin -
  Q7646_RS11145 (Q7646_11225) pilE 2115169..2115540 (-) 372 WP_284040615.1 pilin Machinery gene
  Q7646_RS11150 (Q7646_11230) - 2115912..2116043 (-) 132 WP_012504086.1 hypothetical protein -
  Q7646_RS11155 (Q7646_11235) - 2116125..2116814 (-) 690 WP_050169450.1 M48 family metallopeptidase -
  Q7646_RS11160 (Q7646_11240) - 2116811..2117554 (-) 744 WP_003687014.1 lysophospholipid acyltransferase family protein -
  Q7646_RS11165 (Q7646_11245) gmhB 2117584..2118147 (-) 564 WP_003687015.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -
  Q7646_RS11170 (Q7646_11250) - 2118290..2119942 (+) 1653 WP_050162946.1 LTA synthase family protein -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13987.86 Da        Isoelectric Point: 10.9128

>NTDB_id=789859 Q7646_RS11145 WP_284040615.1 2115169..2115540(-) (pilE) [Neisseria gonorrhoeae strain 2014E02-242]
MASTGVNKEIKGKKLSLWTKRQDGSVKWFCGQPVKRESNNADAVTADGTDGANGTKIETKHLPSTCRDESSAGCIETPRA
DFKHFQKISRYRVLPESRRMARKQRRCRRGIRFNNQRQICSES

Nucleotide


Download         Length: 372 bp        

>NTDB_id=789859 Q7646_RS11145 WP_284040615.1 2115169..2115540(-) (pilE) [Neisseria gonorrhoeae strain 2014E02-242]
ATGGCTTCAACCGGCGTAAACAAAGAAATCAAAGGCAAAAAACTCTCCCTGTGGACCAAGCGTCAAGACGGTTCGGTAAA
ATGGTTCTGCGGACAGCCGGTTAAGCGCGAAAGCAACAACGCCGACGCCGTCACCGCCGACGGCACCGACGGCGCCAACG
GCACCAAAATCGAAACCAAGCACCTGCCGTCAACCTGCCGCGATGAATCATCTGCCGGTTGCATAGAAACACCACGCGCC
GATTTCAAACACTTCCAAAAAATCAGCCGTTACCGAGTATTACCTGAATCACGGCGAATGGCCCGCAAACAACGGCGCTG
CCGGCGTGGCATCCGCTTCAACAATCAAAGGCAAATATGTTCAGAAAGTTGA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(2-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

72.222

58.537

0.423