Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   Q7646_RS11005 Genome accession   NZ_CP131638
Coordinates   2088952..2089377 (-) Length   141 a.a.
NCBI ID   WP_123771587.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 2014E02-242     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2083952..2094377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7646_RS10975 (Q7646_11055) thiC 2084081..2085982 (+) 1902 WP_047918965.1 phosphomethylpyrimidine synthase ThiC -
  Q7646_RS10980 (Q7646_11060) - 2086471..2086830 (-) 360 Protein_2124 pilin -
  Q7646_RS10985 (Q7646_11065) - 2086870..2087232 (-) 363 Protein_2125 pilin -
  Q7646_RS10990 (Q7646_11070) - 2087278..2087598 (-) 321 Protein_2126 pilin -
  Q7646_RS10995 (Q7646_11075) - 2087659..2088063 (-) 405 Protein_2127 pilin -
  Q7646_RS11000 (Q7646_11080) - 2088543..2088899 (-) 357 Protein_2128 pilin -
  Q7646_RS11005 (Q7646_11085) pilE 2088952..2089377 (-) 426 WP_123771587.1 pilin Machinery gene
  Q7646_RS11010 (Q7646_11090) - 2089429..2089737 (+) 309 Protein_2130 NAD(P)-dependent oxidoreductase -
  Q7646_RS11015 (Q7646_11095) metG 2089812..2091866 (-) 2055 WP_047917751.1 methionine--tRNA ligase -
  Q7646_RS11020 (Q7646_11100) glmS 2091982..2093820 (-) 1839 WP_003691965.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15221.25 Da        Isoelectric Point: 9.3144

>NTDB_id=789855 Q7646_RS11005 WP_123771587.1 2088952..2089377(-) (pilE) [Neisseria gonorrhoeae strain 2014E02-242]
MASASTIKGKYVQKVEVAKGVVTAQMASTGVNNEIKGKKLSLWARREAGSVKWFCGQPVTRDKAVTDDAVKDVTGNDKIE
TKHLPSTCRCFQIGSVKWFCGQPVTRDNAGTDAVTADTTGKDKEIDTKHLPSTCRDKSSAE

Nucleotide


Download         Length: 426 bp        

>NTDB_id=789855 Q7646_RS11005 WP_123771587.1 2088952..2089377(-) (pilE) [Neisseria gonorrhoeae strain 2014E02-242]
GTGGCATCCGCTTCAACAATCAAAGGCAAATATGTTCAGAAAGTTGAAGTCGCAAAAGGCGTCGTCACCGCCCAAATGGC
TTCAACCGGCGTAAACAATGAAATCAAAGGCAAAAAACTCTCCCTGTGGGCCAGGCGTGAAGCCGGTTCGGTAAAATGGT
TCTGCGGACAGCCGGTTACGCGCGACAAAGCCGTCACCGACGACGCCGTCAAAGACGTCACCGGCAACGACAAAATCGAA
ACCAAGCACCTGCCGTCAACCTGCCGTTGCTTTCAAATCGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCGA
CAACGCCGGCACCGACGCCGTCACCGCCGACACCACCGGCAAAGACAAAGAAATCGACACCAAGCACCTGCCGTCAACCT
GCCGCGATAAATCATCTGCCGAATAA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(2-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

77.528

63.121

0.489
  pilE Neisseria gonorrhoeae MS11

72.289

58.865

0.426