Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   PUW52_RS02405 Genome accession   NZ_CP118078
Coordinates   457409..458119 (-) Length   236 a.a.
NCBI ID   WP_022525174.1    Uniprot ID   -
Organism   Streptococcus anginosus strain VSI16     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 452409..463119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW52_RS02390 (PUW52_02390) - 452798..453922 (+) 1125 WP_024052060.1 AI-2E family transporter -
  PUW52_RS02395 (PUW52_02395) - 454146..455793 (+) 1648 Protein_430 phosphoenolpyruvate carboxykinase (ATP) -
  PUW52_RS02400 (PUW52_02400) - 455910..457250 (+) 1341 WP_024052057.1 hemolysin family protein -
  PUW52_RS02405 (PUW52_02405) treR 457409..458119 (-) 711 WP_022525174.1 trehalose operon repressor Regulator
  PUW52_RS02410 (PUW52_02410) treP 458299..460311 (+) 2013 WP_024052056.1 PTS system trehalose-specific EIIBC component -
  PUW52_RS02415 (PUW52_02415) treC 460518..462149 (+) 1632 WP_070672417.1 alpha,alpha-phosphotrehalase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27642.67 Da        Isoelectric Point: 9.2637

>NTDB_id=789835 PUW52_RS02405 WP_022525174.1 457409..458119(-) (treR) [Streptococcus anginosus strain VSI16]
MKKYEQIFKLLEQDILNEKYQMNDYLPSEHELVQTYKVSRDTIRKSLDLLQKAGLIQKMRGQGSKVIQQEQIDFPVSNLT
SYQELVRQHGMNSKTNVIQLEKITVDKKLSSLTGFPEYRLVWRIIRQRVVDGIASVLDIDYLDKSFVPSISREIAEHSIY
AYLEDELGLHISYAQKEITIDPATNRDKILMNIGNDHHVVSVKSKVYLADGQQFQFTDSRHKLEKFRFVDFSKRQK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=789835 PUW52_RS02405 WP_022525174.1 457409..458119(-) (treR) [Streptococcus anginosus strain VSI16]
ATGAAAAAATATGAACAAATTTTTAAACTCTTAGAACAAGATATTCTAAACGAGAAATATCAGATGAATGATTATCTTCC
TAGCGAACACGAACTTGTCCAGACCTACAAGGTCAGCCGTGACACGATTCGTAAATCGCTTGATTTGCTTCAAAAAGCTG
GTCTCATTCAAAAAATGAGAGGTCAAGGCTCTAAAGTCATCCAACAAGAACAGATTGACTTTCCTGTTTCCAACCTAACT
AGTTACCAAGAACTTGTTCGGCAACATGGAATGAATTCTAAAACCAATGTCATACAGTTAGAAAAAATTACAGTTGATAA
AAAATTATCCAGTCTTACTGGTTTTCCTGAATACCGTCTGGTGTGGCGGATTATTCGCCAAAGGGTCGTTGACGGGATTG
CCTCCGTCTTGGATATTGATTACCTTGATAAGAGTTTTGTCCCTTCTATTAGCCGTGAAATTGCAGAGCATTCAATTTAT
GCTTATTTAGAAGATGAACTGGGACTACACATTTCTTACGCCCAAAAAGAAATCACAATTGATCCAGCCACCAATCGCGA
TAAAATATTGATGAACATTGGAAATGACCACCATGTCGTCTCTGTCAAATCCAAAGTTTATCTTGCAGACGGACAACAAT
TTCAGTTTACAGATAGTCGTCATAAACTCGAAAAATTCCGTTTCGTTGACTTTTCCAAACGGCAAAAATGA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(89-227)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

64.831

100

0.648